Gene: Sopen12g034530

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g034530
  • Transcript Identifier Sopen12g034530.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 82799497-82820940 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g034530.1

Descriptions

  • Description chromatin remodeling 5 (CHR5) | FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding | INVOLVED IN: chromatin assembly or disassembly | LOCATED IN: chromatin, nucleus | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Chromo domain , SNF2-related , Homeodomain-like , DEAD-like helicase, N-terminal , Chromo domain-like , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE)
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G13370

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT2G13370

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR025260 Domain of unknown function DUF4208
IPR038718 SNF2-like, N-terminal domain superfamily
IPR016197 Chromo-like domain superfamily
IPR000330 SNF2, N-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR023780 Chromo domain
IPR000953 Chromo/chromo shadow domain
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
12.4.7.1 Chromatin organisation.nucleosome remodeling.CHD chromatin remodeling activities.CHD1-type chromatin remodeling factor (CHR5)
15.3.4.3.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.component CHR5