Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 6.3e-123 444.1 225 100.0
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.2e-121 439.9 225 99.1
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 2.8e-115 418.7 225 94.2
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 5.2e-101 371.3 225 82.2
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 7.5e-100 367.5 222 82.0
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 9.8e-100 367.1 222 82.4
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-98 363.6 349 61.0
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 4.1e-98 361.7 222 81.1
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 4.6e-97 358.2 222 80.6
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 7.8e-97 357.5 222 81.5
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 5.0e-96 354.8 222 80.2
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 1.1e-95 353.6 222 80.2
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 4.4e-92 341.7 222 77.9
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 5.4e-90 334.7 222 75.7
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.2e-89 333.6 224 76.3
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.2e-76 290.4 221 66.1
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.7e-75 286.6 222 64.4
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 7.1e-74 281.2 221 63.8
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.6e-73 280.0 222 63.5
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 3.0e-72 275.8 222 62.2
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 5.1e-72 275.0 221 61.1
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 8.6e-72 274.2 222 61.3
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 1.9e-71 273.1 221 62.9
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.3e-71 272.3 222 61.3
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 7.3e-71 271.2 222 61.3
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 1.6e-70 270.0 221 62.9
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 4.7e-70 268.5 225 62.7
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.2e-70 268.1 223 60.5
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 6.2e-70 268.1 223 60.5
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.4e-69 266.2 223 60.5
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 4.0e-69 265.4 222 60.4
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.2e-69 265.0 223 59.6
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.2e-69 265.0 223 59.6
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.2e-69 265.0 223 59.6
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 5.2e-69 265.0 226 64.2
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 6.8e-69 264.6 223 61.0
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.0e-68 263.1 223 59.2
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.0e-68 263.1 223 59.2
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.0e-68 263.1 223 59.2
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 2.0e-68 263.1 226 60.6
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 2.6e-68 262.7 222 59.5
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 3.4e-68 262.3 225 60.0
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.4e-68 261.9 223 59.2
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 7.6e-68 261.2 222 60.8
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.6e-68 261.2 223 58.7
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.3e-67 260.4 207 63.3
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.7e-67 260.0 216 59.7
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 3.8e-67 258.8 225 60.4
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 8.4e-67 257.7 214 59.8
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.9e-66 256.5 219 63.0
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 3.2e-66 255.8 225 60.0
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 3.2e-66 255.8 222 59.9
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 6.0e-65 251.5 227 58.1
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 7.8e-65 251.1 167 76.6
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.0e-64 250.8 202 63.9
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.3e-64 250.4 226 57.5
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 1.7e-64 250.0 223 59.6
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 2.3e-64 249.6 225 59.1
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 3.0e-64 249.2 222 59.9
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 3.9e-64 248.8 222 59.0
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 6.6e-64 248.1 222 62.6
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 4.3e-63 245.4 226 60.2
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 5.6e-63 245.0 222 58.1
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 5.6e-63 245.0 224 58.9
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 2.1e-62 243.0 222 59.9
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 2.1e-62 243.0 222 59.5
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 8.1e-62 241.1 225 57.8
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 3.1e-61 239.2 222 58.1
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 4.0e-61 238.8 222 56.3
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.2e-60 237.3 221 55.7
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 3.4e-60 235.7 218 57.3
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 7.6e-60 234.6 214 57.0
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 2.2e-59 233.0 214 56.5
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 2.2e-59 233.0 214 56.1
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.9e-59 232.6 222 54.1
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.9e-59 232.6 222 55.9
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 2.9e-59 232.6 252 50.4
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 3.8e-59 232.3 221 54.3
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 4.9e-59 231.9 189 64.6
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 8.4e-59 231.1 214 56.1
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 8.4e-59 231.1 221 55.2
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.4e-58 229.6 193 61.1
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 3.2e-58 229.2 197 62.9
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 5.4e-58 228.4 222 58.1
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 7.1e-58 228.0 194 59.8
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.2e-57 227.3 214 55.1
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 2.1e-57 226.5 214 55.1
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 2.7e-57 226.1 229 55.0
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 3.5e-57 225.7 194 58.8
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 3.5e-57 225.7 214 54.7
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 3.5e-57 225.7 214 54.7
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 4.6e-57 225.3 233 50.2
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 6.0e-57 224.9 236 54.2
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 7.9e-57 224.6 217 55.3
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.0e-56 224.2 204 60.8
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.0e-56 224.2 199 60.3
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.7e-56 223.4 214 54.2
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 1.7e-56 223.4 228 53.1
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.7e-56 223.4 199 60.3
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 1.7e-56 223.4 236 54.2
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 3.9e-56 222.2 228 55.7
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 3.9e-56 222.2 214 53.7
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-55 219.9 218 54.1
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.5e-55 219.5 238 54.2
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 2.5e-55 219.5 261 52.1
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 5.6e-55 218.4 222 52.7
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.3e-54 217.2 268 48.1
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 1.3e-54 217.2 260 50.0
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.6e-54 216.9 201 60.2
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.8e-54 216.1 215 56.7
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 5.3e-53 211.8 225 55.1
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 5.3e-53 211.8 184 62.0
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 6.9e-53 211.5 275 48.7
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.4e-52 209.1 186 61.8
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 4.5e-52 208.8 199 58.8
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.2e-51 206.5 171 61.4
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 2.9e-51 206.1 189 56.1
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 3.8e-51 205.7 199 58.8
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 6.4e-51 204.9 207 55.1
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 3.9e-48 195.7 220 54.5
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 4.3e-47 192.2 177 61.0
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 3.4e-44 182.6 152 66.4
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 7.6e-44 181.4 188 55.9
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 1.0e-43 181.0 197 55.3
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.2e-43 179.9 152 61.2
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.5e-39 167.2 156 53.8
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 2.0e-36 156.8 144 60.4
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 4.5e-36 155.6 137 59.9
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 5.9e-36 155.2 148 59.5
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 1.4e-34 150.6 181 50.3
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 3.2e-34 149.4 141 57.4
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 3.0e-32 142.9 147 54.4
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 3.3e-31 139.4 154 50.6
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 2.8e-30 136.3 101 73.3
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 1.8e-29 133.7 212 39.6
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 2.0e-28 130.2 135 53.3
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 1.9e-26 123.6 203 39.9
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 5.5e-26 122.1 192 39.6
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 5.1e-24 115.5 92 59.8
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 1.1e-23 114.4 124 51.6
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 7.4e-23 111.7 192 37.0
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 2.0e-20 103.6 94 56.4
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 1.9e-18 97.1 95 55.8
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 4.7e-17 92.4 98 52.0
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 6.1e-17 92.0 155 40.0
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 7.9e-17 91.7 152 40.1
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.3e-15 86.3 68 57.4
arahy.Tifrunner.gnm1.ann1.6AA68Y Arachis hypogaea HOM05D001355 ORTHO05D006435 6.3e-14 82.0 93 60.2
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.6e-12 77.4 167 35.3
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.9e-11 73.2 70 55.7
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.9e-11 73.2 50 68.0
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 2.6e-07 60.1 211 28.4


User provided reference genes

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