Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 1.4e-187 659.4 332 100.0
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 2.7e-186 655.2 332 99.4
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 8.6e-169 597.0 332 88.9
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.1e-168 596.7 332 89.2
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.0e-166 590.1 332 88.3
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 1.4e-163 579.7 332 88.0
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 5.4e-163 577.8 332 85.8
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 7.0e-163 577.4 332 86.1
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 8.6e-161 570.5 332 84.6
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 2.5e-160 568.9 333 84.1
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 1.6e-159 566.2 332 84.0
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 2.3e-158 562.4 332 83.4
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 1.9e-155 552.7 332 82.2
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 6.0e-154 547.7 354 80.2
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 6.0e-154 547.7 354 80.2
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.6e-151 539.7 332 81.3
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 1.9e-147 526.2 330 78.8
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.0e-145 518.8 334 76.9
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.5e-144 516.5 333 76.6
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.9e-144 516.2 333 77.5
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 3.3e-144 515.4 333 75.1
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 2.1e-143 512.7 339 76.7
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 2.4e-142 509.2 330 75.8
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 2.4e-142 509.2 332 75.3
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.0e-142 508.4 331 75.8
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 1.2e-141 506.9 333 76.0
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 3.4e-141 505.4 333 74.8
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.2e-140 502.7 331 74.9
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 4.9e-140 501.5 330 75.8
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 6.4e-140 501.1 334 77.5
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 2.4e-139 499.2 333 76.9
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 3.2e-139 498.8 334 74.6
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.2e-139 498.4 331 74.0
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 5.4e-139 498.0 337 75.1
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 9.3e-139 497.3 335 74.9
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 3.5e-138 495.4 333 73.6
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 5.1e-137 491.5 335 74.0
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 5.1e-137 491.5 334 74.0
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.9e-136 489.6 333 75.1
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 5.6e-136 488.0 333 73.6
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 7.3e-136 487.6 332 73.5
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 9.6e-136 487.3 335 73.1
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 9.6e-136 487.3 337 74.2
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 3.6e-135 485.3 336 73.2
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 4.8e-135 485.0 331 74.3
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 1.4e-134 483.4 334 72.2
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.1e-134 482.3 338 73.4
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 3.1e-134 482.3 335 73.1
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 4.0e-134 481.9 336 72.6
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.3e-134 481.5 318 74.2
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 5.3e-134 481.5 335 73.4
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 6.9e-134 481.1 335 72.5
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 6.9e-134 481.1 333 70.6
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 3.4e-133 478.8 338 73.1
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 7.6e-133 477.6 335 72.5
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 9.9e-133 477.2 335 72.5
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.3e-132 476.9 333 71.8
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 2.9e-132 475.7 338 71.0
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 4.9e-132 474.9 335 71.9
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.4e-132 474.6 339 71.7
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.4e-132 474.6 339 71.7
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.1e-131 473.8 335 71.9
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.1e-131 473.8 331 72.5
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 2.4e-131 472.6 333 71.2
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 2.4e-131 472.6 338 70.1
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.4e-131 472.6 333 70.0
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 3.2e-131 472.2 333 72.4
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 5.4e-131 471.5 341 69.2
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.1e-130 469.5 335 71.6
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 3.5e-130 468.8 324 71.6
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 4.6e-130 468.4 338 70.7
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 4.6e-130 468.4 338 69.5
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 6.0e-130 468.0 341 71.6
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 6.0e-130 468.0 334 71.3
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 7.9e-130 467.6 338 70.4
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 1.8e-129 466.5 334 70.7
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.8e-129 466.5 330 69.4
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 2.3e-129 466.1 334 70.1
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 3.0e-129 465.7 379 65.4
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 2.5e-128 462.6 339 70.5
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.6e-128 461.5 333 71.2
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 7.4e-128 461.1 330 67.9
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.8e-127 458.4 331 69.8
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 6.2e-127 458.0 323 71.5
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 6.2e-127 458.0 354 66.1
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 1.1e-126 457.2 341 70.1
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 9.0e-126 454.1 334 69.8
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 9.9e-125 450.7 331 69.2
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 3.8e-124 448.7 340 68.5
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.4e-123 446.8 328 69.5
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.4e-123 446.8 328 69.5
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 2.4e-123 446.0 347 69.2
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 4.2e-123 445.3 339 68.4
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 7.1e-123 444.5 330 67.0
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.0e-121 440.7 334 66.8
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.3e-121 440.3 334 68.0
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 1.3e-121 440.3 338 68.3
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.8e-121 439.9 338 67.5
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 4.3e-120 435.3 339 65.8
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 7.6e-117 424.5 339 66.4
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.7e-116 423.3 341 65.4
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 2.5e-115 419.5 333 65.5
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.8e-113 413.3 355 64.2
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 2.0e-109 399.8 358 62.0
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 7.6e-109 397.9 337 62.6
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 1.2e-106 390.6 353 61.2
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 6.1e-106 388.3 263 74.1
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.0e-105 387.5 352 59.4
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 4.1e-102 375.6 321 63.9
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 4.1e-102 375.6 341 58.9
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 4.5e-101 372.1 284 69.0
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.0e-100 370.9 343 58.9
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 1.3e-100 370.5 328 58.8
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 1.7e-100 370.2 356 59.3
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 3.8e-100 369.0 338 58.6
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 1.1e-91 340.9 323 59.4
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.7e-88 328.6 230 72.2
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 5.3e-86 322.0 187 86.1
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 1.2e-82 310.8 254 64.6
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.2e-75 285.8 246 63.8
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.1e-74 283.5 212 67.9
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.0e-73 281.2 363 45.7
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 6.1e-66 255.4 267 57.7
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 3.4e-64 249.6 190 67.4
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 2.7e-61 240.0 382 42.1
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.9e-59 233.8 346 43.6
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 9.5e-59 231.5 358 41.9
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.6e-58 230.7 347 42.1
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 7.0e-54 215.3 212 55.7
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.0e-52 211.5 349 42.4
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 9.5e-51 204.9 223 52.9
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 1.2e-45 188.0 173 52.6
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 1.3e-44 184.5 368 36.7
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.7e-39 167.5 356 35.4
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 8.6e-36 155.2 329 35.3
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 9.2e-30 135.2 119 63.0
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.5e-27 127.9 349 32.4
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 9.6e-27 125.2 147 50.3
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 6.2e-26 122.5 125 52.0
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 8.1e-26 122.1 140 47.1
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 9.9e-24 115.2 85 64.7
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 9.9e-24 115.2 94 58.5
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 6.4e-23 112.5 103 60.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-22 111.7 105 53.3
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 3.2e-22 110.2 94 56.4
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 1.1e-19 101.7 148 35.8
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 7.3e-19 99.0 337 27.9
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.5e-16 91.3 80 60.0
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 3.4e-16 90.1 54 74.1
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 9.9e-16 88.6 64 62.5
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-14 85.1 73 53.4
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.0e-12 78.6 40 87.5
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.8e-10 70.5 163 33.7
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 6.9e-09 65.9 171 26.3
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.0e-08 64.3 52 57.7
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 4.5e-08 63.2 43 62.8


User provided reference genes

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