Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4JD3YM Arachis hypogaea HOM05D004509 ORTHO05D005568 0.0e+00 1117.8 567 100.0
TPR.G12300 Trifolium pratense HOM05D004509 ORTHO05D005568 6.9e-243 844.0 596 74.3
Lj3g0006861 Lotus japonicus HOM05D004509 ORTHO05D005568 1.0e-238 830.1 593 73.7
Psat5g226800 Pisum sativum HOM05D004509 ORTHO05D005568 3.0e-238 828.6 596 72.3
Ca_14040_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 1.1e-237 826.6 595 73.3
Medtr3g007760 Medicago truncatula HOM05D004509 ORTHO05D005568 4.3e-237 824.7 596 73.3
Glyma.06G316600 Glycine max HOM05D004509 ORTHO05D005568 2.1e-236 822.4 593 73.4
Lalb_Chr15g0079611 Lupinus albus HOM05D004509 ORTHO05D005568 1.3e-230 803.1 594 72.4
Glyma.04G130500 Glycine max HOM05D004509 ORTHO05D005568 1.3e-228 796.6 574 73.2
Lalb_Chr18g0049081 Lupinus albus HOM05D004509 ORTHO05D005568 1.5e-218 763.1 574 70.9
Dinv28569 Davidia involucrata HOM05D004509 ORTHO05D005568 7.2e-208 727.6 599 64.9
Cfa008172 Carpinus fangiana HOM05D004509 ORTHO05D005568 3.9e-206 721.8 599 64.8
Potri.001G124000 Populus trichocarpa HOM05D004509 ORTHO05D005568 3.9e-206 721.8 593 65.4
Thecc.03G156200 Theobroma cacao HOM05D004509 ORTHO05D005568 1.7e-204 716.5 595 65.0
QL09p019881 Quercus lobata HOM05D004509 ORTHO05D005568 2.8e-204 715.7 597 64.8
CiPaw.03G093600 Carya illinoinensis HOM05D004509 ORTHO05D005568 2.4e-203 712.6 593 63.6
Manes.06G135100 Manihot esculenta HOM05D004509 ORTHO05D005568 2.4e-203 712.6 595 64.5
Prupe.2G277400 Prunus persica HOM05D004509 ORTHO05D005568 2.6e-202 709.1 595 64.2
Ciclev10004605m.g Citrus clementina HOM05D004509 ORTHO05D005568 5.0e-201 704.9 575 64.9
GSVIVG01018636001 Vitis vinifera HOM05D004509 ORTHO05D005568 4.2e-200 701.8 594 62.3
MD07G1254100 Malus domestica HOM05D004509 ORTHO05D005568 1.6e-199 699.9 594 63.0
Sabra01G0095600 Salix brachista HOM05D004509 ORTHO05D005568 2.1e-199 699.5 610 62.5
TWI23G1058 Tripterygium wilfordii HOM05D004509 ORTHO05D005568 2.7e-199 699.1 603 63.3
RcHm_v2.0_Chr1g0374441 Rosa chinensis HOM05D004509 ORTHO05D005568 5.2e-198 694.9 595 63.7
CSS0008253 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 8.8e-198 694.1 594 62.5
FvH4_7g27570 Fragaria vesca HOM05D004509 ORTHO05D005568 1.2e-197 693.7 595 63.5
CiPaw.04G060100 Carya illinoinensis HOM05D004509 ORTHO05D005568 2.6e-197 692.6 594 61.8
Duzib068G0492 Durio zibethinus HOM05D004509 ORTHO05D005568 9.7e-197 690.6 595 62.7
Gohir.A12G198700 Gossypium hirsutum HOM05D004509 ORTHO05D005568 1.3e-196 690.3 594 62.6
Manes.14G035800 Manihot esculenta HOM05D004509 ORTHO05D005568 1.3e-196 690.3 594 62.0
Gohir.D12G201400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 3.7e-196 688.7 594 62.3
Gorai.008G216500 Gossypium raimondii HOM05D004509 ORTHO05D005568 3.7e-196 688.7 594 62.3
Sed0019493 Sechium edule HOM05D004509 ORTHO05D005568 1.4e-195 686.8 594 63.1
CSS0023984 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 2.2e-193 679.5 592 61.8
TAR374G1004 Trochodendron aralioides HOM05D004509 ORTHO05D005568 2.9e-193 679.1 596 62.1
CSS0001277 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 5.0e-193 678.3 592 61.8
Actinidia13576 Actinidia chinensis HOM05D004509 ORTHO05D005568 1.9e-192 676.4 594 60.9
MELO3C014338.2 Cucumis melo HOM05D004509 ORTHO05D005568 1.6e-191 673.3 595 61.5
Lj8C42G3 Lonicera japonica HOM05D004509 ORTHO05D005568 1.0e-190 670.6 613 60.4
FAN06G3392 Fragaria x ananassa HOM05D004509 ORTHO05D005568 4.4e-189 665.2 580 63.1
Sed0007620 Sechium edule HOM05D004509 ORTHO05D005568 5.7e-189 664.8 596 61.1
Potri.003G109400 Populus trichocarpa HOM05D004509 ORTHO05D005568 7.5e-189 664.5 596 61.4
THA.LOC104808282 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 7.5e-189 664.5 592 59.6
FAN01G2021 Fragaria x ananassa HOM05D004509 ORTHO05D005568 8.3e-188 661.0 579 62.7
Cc02_g04230 Coffea canephora HOM05D004509 ORTHO05D005568 9.1e-187 657.5 593 61.0
AT4G25230 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 1.2e-186 657.1 592 60.0
AL7G27910 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 1.6e-186 656.8 592 60.0
Actinidia24699 Actinidia chinensis HOM05D004509 ORTHO05D005568 2.7e-186 656.0 593 60.0
Carub.0007s1579 Capsella rubella HOM05D004509 ORTHO05D005568 3.5e-186 655.6 592 59.8
Sp7g23250 Schrenkiella parvula HOM05D004509 ORTHO05D005568 3.5e-186 655.6 592 59.6
Thhalv10024774m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 1.0e-185 654.1 592 59.3
Rhsim03G0168100 Rhododendron simsii HOM05D004509 ORTHO05D005568 1.0e-185 654.1 575 60.5
CsaV3_6G036820 Cucumis sativus L. HOM05D004509 ORTHO05D005568 1.7e-185 653.3 595 60.7
BcaB03g12459 Brassica carinata HOM05D004509 ORTHO05D005568 2.9e-185 652.5 592 59.6
BcaC07g38180 Brassica carinata HOM05D004509 ORTHO05D005568 6.6e-185 651.4 592 59.0
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 6.6e-185 651.4 592 59.0
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 1.1e-184 650.6 592 59.0
THA.LOC104825064 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 1.5e-184 650.2 592 59.5
CARHR232640 Cardamine hirsuta HOM05D004509 ORTHO05D005568 2.5e-184 649.4 592 59.5
Carub.0008s1147 Capsella rubella HOM05D004509 ORTHO05D005568 3.3e-184 649.0 593 58.9
Sc13g0007910 Simmondsia chinensis HOM05D004509 ORTHO05D005568 5.5e-184 648.3 592 60.6
Eucgr.K00157 Eucalyptus grandis HOM05D004509 ORTHO05D005568 1.2e-183 647.1 596 58.9
Hma1.2p1_1640F.1_g295070 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 2.8e-183 646.0 595 60.3
Aa31sc16G230 Aethionema arabicum HOM05D004509 ORTHO05D005568 6.1e-183 644.8 594 59.1
Nn6g33992 Nelumbo nucifera HOM05D004509 ORTHO05D005568 6.1e-183 644.8 609 57.8
A03p55840 Brassica napus HOM05D004509 ORTHO05D005568 2.3e-182 642.9 595 58.3
C07p54120 Brassica napus HOM05D004509 ORTHO05D005568 3.0e-182 642.5 595 58.3
vmacro06795 Vaccinium macrocarpon HOM05D004509 ORTHO05D005568 1.2e-181 640.6 587 59.5
EL10Ac3g05841 Beta vulgaris HOM05D004509 ORTHO05D005568 2.6e-181 639.4 614 58.3
FAN03G1842 Fragaria x ananassa HOM05D004509 ORTHO05D005568 9.8e-181 637.5 594 60.1
BolC7t45898H Brassica oleracea HOM05D004509 ORTHO05D005568 2.2e-180 636.3 595 58.0
BcaC06g32827 Brassica carinata HOM05D004509 ORTHO05D005568 2.8e-180 636.0 592 58.6
PSO170G1118 Papaver somniferum HOM05D004509 ORTHO05D005568 2.8e-180 636.0 596 58.2
BraA03t14655Z Brassica rapa HOM05D004509 ORTHO05D005568 8.3e-180 634.4 595 58.2
PSO017G1204 Papaver somniferum HOM05D004509 ORTHO05D005568 1.8e-179 633.3 596 58.1
AT5G51450 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 1.0e-177 627.5 610 57.4
HanXRQChr07g0205911 Helianthus annuus HOM05D004509 ORTHO05D005568 1.0e-177 627.5 597 57.6
Dinv22949 Davidia involucrata HOM05D004509 ORTHO05D005568 8.6e-177 624.4 516 62.8
FAN10G0128 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.9e-176 623.2 580 60.0
Aqoxy7G00754 Aquilegia oxysepala HOM05D004509 ORTHO05D005568 8.0e-175 617.8 595 56.5
ECA238G4038 Erigeron canadensis HOM05D004509 ORTHO05D005568 8.0e-175 617.8 588 57.3
Ah.13g066850 Amaranthus hybridus HOM05D004509 ORTHO05D005568 1.0e-174 617.5 628 56.4
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 3.1e-174 615.9 453 71.1
CAN.G839.2 Capsicum annuum HOM05D004509 ORTHO05D005568 2.6e-173 612.8 594 58.1
TAR375G0675 Trochodendron aralioides HOM05D004509 ORTHO05D005568 5.4e-171 605.1 583 58.0
FAN06G0097 Fragaria x ananassa HOM05D004509 ORTHO05D005568 7.0e-171 604.7 592 58.4
HanXRQChr14g0461391 Helianthus annuus HOM05D004509 ORTHO05D005568 1.2e-170 604.0 595 57.5
Gohir.A07G041300 Gossypium hirsutum HOM05D004509 ORTHO05D005568 1.6e-170 603.6 592 57.8
Sopen06g010960 Solanum pennellii HOM05D004509 ORTHO05D005568 2.0e-170 603.2 594 57.2
MSTRG.8823 Avicennia marina HOM05D004509 ORTHO05D005568 2.7e-170 602.8 597 57.3
DCAR_018107 Daucus carota HOM05D004509 ORTHO05D005568 3.5e-170 602.4 592 57.6
Nitab4.5_0000262g0140 Nicotiana tabacum HOM05D004509 ORTHO05D005568 6.0e-170 601.7 594 57.2
Migut.F00473 Erythranthe guttata HOM05D004509 ORTHO05D005568 1.3e-169 600.5 592 56.8
Oeu015322.1 Olea europaea HOM05D004509 ORTHO05D005568 3.9e-169 599.0 594 57.6
Nitab4.5_0000448g0150 Nicotiana tabacum HOM05D004509 ORTHO05D005568 2.5e-168 596.3 594 57.1
Sabra03G0075900 Salix brachista HOM05D004509 ORTHO05D005568 3.3e-168 595.9 641 54.0
Rhsim03G0167900 Rhododendron simsii HOM05D004509 ORTHO05D005568 1.2e-167 594.0 560 58.2
Peaxi162Scf00054g02212 Petunia axillaris HOM05D004509 ORTHO05D005568 2.3e-166 589.7 577 58.4
Duzib205G0424 Durio zibethinus HOM05D004509 ORTHO05D005568 3.1e-166 589.3 584 56.7
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 1.2e-165 587.4 604 56.6
Lsat_1_v5_gn_2_129181 Lactuca sativa HOM05D004509 ORTHO05D005568 1.9e-163 580.1 622 54.3
Atru.chr1.723 Acer truncatum HOM05D004509 ORTHO05D005568 2.7e-162 576.2 490 62.2
BolC1t01999H Brassica oleracea HOM05D004509 ORTHO05D005568 1.3e-161 573.9 627 52.6
PGR042G2749 Punica granatum HOM05D004509 ORTHO05D005568 8.1e-159 564.7 589 54.7
AUR62015503 Chenopodium quinoa HOM05D004509 ORTHO05D005568 2.9e-156 556.2 604 54.1
Hma1.2p1_1132F.1_g260350 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 1.4e-155 553.9 481 61.7
Oeu022490.1 Olea europaea HOM05D004509 ORTHO05D005568 2.3e-153 546.6 595 54.6
Hund11825 Selenicereus undatus HOM05D004509 ORTHO05D005568 3.0e-153 546.2 596 54.7
ATR0589G031 Amborella trichopoda HOM05D004509 ORTHO05D005568 3.9e-153 545.8 598 51.7
Sp6g13610 Schrenkiella parvula HOM05D004509 ORTHO05D005568 6.2e-151 538.5 516 57.0
Gorai.001G048500 Gossypium raimondii HOM05D004509 ORTHO05D005568 1.8e-150 537.0 596 54.0
AL8G25740 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 6.8e-150 535.0 456 61.8
SGA_v2.0_scaffold70G23600 Striga asiatica HOM05D004509 ORTHO05D005568 8.4e-148 528.1 596 53.4
Gohir.D07G045400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 6.9e-142 508.4 562 53.4
Lalb_Chr04g0264301 Lupinus albus HOM05D004509 ORTHO05D005568 3.4e-141 506.1 357 74.2
BraA01t01605Z Brassica rapa HOM05D004509 ORTHO05D005568 1.2e-133 481.1 499 53.5
A01p16520 Brassica napus HOM05D004509 ORTHO05D005568 3.4e-133 479.6 495 53.7
HPP92_021040 Vanilla planifolia HOM05D004509 ORTHO05D005568 4.6e-130 469.2 591 47.7
HPP92_027424 Vanilla planifolia HOM05D004509 ORTHO05D005568 1.1e-128 464.5 591 47.5
Os07g0484300 Oryza sativa ssp. japonica HOM05D004509 ORTHO05D005568 7.4e-128 461.8 529 49.9
arahy.Tifrunner.gnm1.ann1.WP6JS3 Arachis hypogaea HOM05D004509 ORTHO05D005568 6.9e-126 455.3 242 96.7
Cpa.g.sc3.319 Carica papaya HOM05D004509 ORTHO05D005568 1.1e-123 448.0 374 63.4
Zm00001eb105020 Zea mays HOM05D004509 ORTHO05D005568 1.0e-121 441.4 527 48.2
Zm00001eb321470 Zea mays HOM05D004509 ORTHO05D005568 9.0e-118 428.3 527 47.2
BcaC09g50792 Brassica carinata HOM05D004509 ORTHO05D005568 1.5e-117 427.6 419 56.1
Hund04598 Selenicereus undatus HOM05D004509 ORTHO05D005568 9.7e-112 408.3 349 63.6
Mapoly0141s0003 Marchantia polymorpha HOM05D004509 ORTHO05D005568 4.8e-111 406.0 546 45.1
Mapoly0259s0001 Marchantia polymorpha HOM05D004509 ORTHO05D005568 4.8e-111 406.0 546 45.1
ClCG09G013200 Citrullus lanatus HOM05D004509 ORTHO05D005568 1.4e-107 394.4 316 64.9
MBI04_g41911_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 9.4e-107 391.7 562 43.8
MBI04_g44458_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 4.3e-104 382.9 437 51.7
Lsat_1_v5_gn_9_52140 Lactuca sativa HOM05D004509 ORTHO05D005568 2.8e-103 380.2 598 41.6
CDE11G0295 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 1.4e-102 377.9 398 53.0
Pp3c13_9770 Physcomitrium patens HOM05D004509 ORTHO05D005568 5.1e-97 359.4 540 41.9
SMO298G0006 Selaginella moellendorffii HOM05D004509 ORTHO05D005568 2.2e-95 354.0 570 39.1
Pp3c3_10340 Physcomitrium patens HOM05D004509 ORTHO05D005568 4.8e-95 352.8 542 42.1
Lalb_Chr04g0264311 Lupinus albus HOM05D004509 ORTHO05D005568 8.2e-87 325.5 216 76.9
SEGI_31032 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 1.8e-78 297.7 335 51.3
Lsat_1_v5_gn_3_74740 Lactuca sativa HOM05D004509 ORTHO05D005568 1.2e-69 268.5 355 44.8
CDE02G3300 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 3.6e-66 256.9 347 45.5
COL.COLO4_14126 Corchorus olitorius HOM05D004509 ORTHO05D005568 8.9e-65 252.3 550 34.2
Phvul.005G010300 Phaseolus vulgaris HOM05D004509 ORTHO05D005568 1.8e-62 244.6 169 76.3
Thhalv10014220m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 2.0e-61 241.1 283 48.8
BcaC07g38179 Brassica carinata HOM05D004509 ORTHO05D005568 1.5e-56 224.9 167 64.7
BcaNung06355 Brassica carinata HOM05D004509 ORTHO05D005568 1.3e-55 221.9 218 56.9
unitig_52.g17762 Utricularia gibba HOM05D000486 ORTHO05D000375 3.9e-44 183.7 477 32.7
SEGI_41248 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 2.5e-43 181.0 230 46.5
Cpa.g.sc3.320 Carica papaya HOM05D004509 ORTHO05D005568 2.1e-42 177.9 168 57.1
CBR_g4830 Chara braunii HOM05D004509 ORTHO05D005568 2.9e-39 167.5 559 27.5
ClCG09G013190 Citrullus lanatus HOM05D004509 ORTHO05D005568 1.0e-36 159.1 184 51.1
SEGI_07953 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 6.6e-28 129.8 127 54.3
CDE02G0565 Ceratophyllum demersum HOM05D000698 ORTHO05D000839 2.8e-18 97.8 109 54.1
EL10Ac1g01861 Beta vulgaris HOM05D004509 ORTHO05D005568 8.1e-18 96.3 170 39.4
Ca_06750_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 6.4e-15 86.7 69 63.8
arahy.Tifrunner.gnm1.ann1.G4V0MI Arachis hypogaea HOM05D034079 ORTHO05D082353 1.4e-14 85.5 111 45.9
Lsat_1_v5_gn_4_100040 Lactuca sativa HOM05D004509 ORTHO05D005568 1.9e-14 85.1 112 43.8
ATR0743G218 Amborella trichopoda HOM05D003872 ORTHO05D004592 2.4e-14 84.7 341 26.7
Hma1.2p1_1132F.1_g260340 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 1.6e-13 82.0 112 49.1
Hma1.2p1_1640F.1_g295066 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 1.6e-13 82.0 112 49.1
Pp3c16_2890 Physcomitrium patens HOM05D003872 ORTHO05D004592 3.0e-12 77.8 332 25.0
Lalb_Chr19g0139931 Lupinus albus HOM05D003872 ORTHO05D004592 6.7e-12 76.6 358 26.3
Manes.09G124700 Manihot esculenta HOM05D003872 ORTHO05D004592 1.1e-11 75.9 346 25.1
PSO063G1286 Papaver somniferum HOM05D003872 ORTHO05D004592 2.5e-11 74.7 344 25.0
Cc02_g00340 Coffea canephora HOM05D003872 ORTHO05D004592 5.6e-11 73.6 365 24.7
Mapoly0001s0157 Marchantia polymorpha HOM05D003872 ORTHO05D004592 1.3e-10 72.4 324 25.6
Lalb_Chr01g0000961 Lupinus albus HOM05D003872 ORTHO05D004592 2.1e-10 71.6 337 25.2
MBI04_g36030_MAGBIO Magnolia biondii HOM05D003872 ORTHO05D004592 3.7e-10 70.9 332 24.4
SGA_v2.0_scaffold287G47149 Striga asiatica HOM05D003872 ORTHO05D004592 3.7e-10 70.9 370 24.3
CBR_g8650 Chara braunii HOM05D003872 ORTHO05D004592 1.4e-09 68.9 335 24.5
Rhsim03G0221100 Rhododendron simsii HOM05D002636 ORTHO05D003490 1.8e-09 68.6 353 25.2
HPP92_015263 Vanilla planifolia HOM05D003872 ORTHO05D004592 1.8e-09 68.6 337 25.5
Rhsim09G0212400 Rhododendron simsii HOM05D003872 ORTHO05D004592 2.4e-09 68.2 353 24.6
Oeu027883.1 Olea europaea HOM05D003872 ORTHO05D004592 4.0e-09 67.4 344 24.1
PSO782G2664 Papaver somniferum HOM05D003872 ORTHO05D004592 4.0e-09 67.4 354 24.6
AagrBONN_evm.TU.Sc2ySwM_362.2448 Anthoceros agrestis HOM05D003872 ORTHO05D004592 5.3e-09 67.0 348 23.9
vmacro10187 Vaccinium macrocarpon HOM05D003872 ORTHO05D004592 5.3e-09 67.0 351 23.9
CANSAT56G1448 Cannabis sativa HOM05D003872 ORTHO05D004592 6.9e-09 66.6 339 24.8
Eucgr.K00091 Eucalyptus grandis HOM05D003872 ORTHO05D004592 6.9e-09 66.6 333 24.3
Zm00001eb434600 Zea mays HOM05D003872 ORTHO05D004592 2.5e-06 58.2 76 40.8


User provided reference genes

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