Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 5.2e-63 244.2 122 100.0
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 8.9e-63 243.4 122 98.4
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 8.9e-63 243.4 122 98.4
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 3.4e-54 214.9 121 85.1
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 5.8e-54 214.2 121 85.1
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 2.9e-53 211.8 121 84.3
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.9e-53 211.8 121 83.5
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.9e-53 211.1 121 84.3
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 8.3e-53 210.3 121 83.5
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.1e-52 209.9 121 83.5
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.1e-52 209.9 121 82.6
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.4e-52 209.5 121 82.6
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.4e-52 209.5 121 82.6
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 3.2e-52 208.4 121 82.6
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 5.4e-52 207.6 121 82.6
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 7.0e-52 207.2 121 81.0
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 9.2e-52 206.8 121 81.8
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 2.0e-51 205.7 121 82.6
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 2.7e-51 205.3 121 81.0
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 3.5e-51 204.9 121 81.0
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 3.5e-51 204.9 121 81.8
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 4.6e-51 204.5 121 80.2
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.0e-50 203.4 121 81.0
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.0e-50 203.4 121 81.0
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.0e-50 203.4 121 77.7
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.3e-50 203.0 121 78.5
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.7e-50 202.6 121 78.5
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.7e-50 202.6 122 78.7
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 2.3e-50 202.2 121 79.3
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 3.0e-50 201.8 102 100.0
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 3.9e-50 201.4 121 79.3
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 3.9e-50 201.4 121 79.3
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 3.9e-50 201.4 121 78.5
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 5.0e-50 201.1 121 76.9
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 5.0e-50 201.1 121 79.3
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 8.6e-50 200.3 121 79.3
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 8.6e-50 200.3 121 79.3
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.1e-49 199.9 121 80.2
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.9e-49 199.1 121 79.3
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 2.5e-49 198.7 121 78.5
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 2.5e-49 198.7 121 75.2
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 3.3e-49 198.4 121 75.2
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 3.3e-49 198.4 121 75.2
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 3.3e-49 198.4 121 78.5
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 4.3e-49 198.0 121 77.7
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 7.3e-49 197.2 121 78.5
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 9.5e-49 196.8 116 82.8
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.2e-48 196.4 121 76.9
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 2.1e-48 195.7 120 76.7
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.1e-48 195.7 121 77.7
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 2.8e-48 195.3 121 75.2
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 3.6e-48 194.9 121 78.5
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 3.6e-48 194.9 120 76.7
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 4.7e-48 194.5 120 77.5
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 4.7e-48 194.5 121 75.2
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 6.2e-48 194.1 121 73.6
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 6.2e-48 194.1 121 77.7
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-47 193.4 121 77.7
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-47 193.4 121 77.7
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.1e-47 193.4 121 77.7
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.1e-47 193.4 121 77.7
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-47 193.4 121 77.7
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.1e-47 193.4 121 77.7
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.4e-47 193.0 121 77.7
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.4e-47 193.0 121 76.9
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.4e-47 193.0 121 76.9
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.4e-47 193.0 121 76.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.8e-47 192.6 121 76.9
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.8e-47 192.6 121 74.4
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 2.3e-47 192.2 120 75.0
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 2.3e-47 192.2 123 76.4
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 4.0e-47 191.4 123 75.6
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 4.0e-47 191.4 121 73.6
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 4.0e-47 191.4 121 74.4
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 5.2e-47 191.0 121 73.6
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 5.2e-47 191.0 116 79.3
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 8.9e-47 190.3 121 74.4
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.2e-46 189.9 121 74.4
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.2e-46 189.9 121 75.2
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.5e-46 189.5 121 73.6
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 2.0e-46 189.1 113 78.8
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.0e-46 189.1 121 73.6
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.6e-46 188.7 121 72.7
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 3.4e-46 188.3 122 75.4
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 3.4e-46 188.3 122 75.4
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 3.4e-46 188.3 115 75.7
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 9.8e-46 186.8 121 70.2
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.8e-46 186.8 121 70.2
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.2e-45 185.7 121 70.2
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.2e-45 185.7 121 70.2
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 2.2e-45 185.7 116 74.1
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 6.4e-45 184.1 121 71.1
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 8.3e-45 183.7 133 69.9
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 8.3e-45 183.7 133 69.9
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 2.4e-44 182.2 133 69.2
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 5.4e-44 181.0 122 70.5
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 9.2e-44 180.3 121 71.1
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 2.7e-43 178.7 122 71.3
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 4.6e-43 177.9 116 70.7
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.0e-43 177.6 116 70.7
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.3e-42 176.4 118 72.9
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.3e-42 176.4 116 69.8
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.5e-41 172.9 120 65.8
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 3.3e-41 171.8 118 72.0
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.3e-41 171.8 119 66.4
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.3e-41 171.8 119 66.4
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.6e-40 169.5 121 69.4
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 4.7e-40 167.9 120 65.0
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.8e-39 166.0 83 100.0
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 4.0e-39 164.9 121 62.8
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 2.0e-38 162.5 120 63.3
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 2.6e-38 162.2 106 70.8
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 5.8e-38 161.0 113 67.3
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 4.6e-35 151.4 94 78.7
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 5.6e-33 144.4 98 68.4
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 7.3e-33 144.1 99 68.7
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.8e-31 139.4 121 57.9
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-26 122.9 117 59.0
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.1e-23 113.6 92 63.0
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-22 109.8 108 55.6
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.6e-22 109.0 96 57.3
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 7.6e-22 107.5 107 45.8
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-18 96.7 101 56.4
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.7e-18 94.0 53 84.9
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.8e-16 89.0 56 78.6
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 3.1e-15 85.5 54 72.2
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.4e-12 76.6 56 71.4
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.3e-10 70.1 50 64.0
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-08 63.5 56 62.5
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.7e-08 62.0 30 96.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 4.0e-07 58.5 122 31.1
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 3.4e-06 55.5 30 83.3


User provided reference genes

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