Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.3e-151 539.7 258 100.0
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.1e-94 350.5 261 72.0
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.1e-94 350.5 261 72.0
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 8.6e-84 314.3 260 63.8
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 5.6e-83 311.6 260 62.7
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 7.3e-83 311.2 260 63.1
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 3.6e-82 308.9 260 62.7
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 1.8e-81 306.6 260 62.3
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 6.8e-81 304.7 260 60.8
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 1.1e-78 297.4 260 60.0
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 1.9e-78 296.6 256 62.1
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 7.8e-77 291.2 266 60.5
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 2.8e-74 282.7 262 58.4
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 1.8e-73 280.0 264 58.0
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 2.4e-73 279.6 261 57.5
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 4.0e-73 278.9 260 57.7
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 5.3e-73 278.5 260 56.9
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 7.6e-72 274.6 261 55.6
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 1.7e-71 273.5 262 55.3
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 2.2e-71 273.1 260 56.2
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 4.9e-71 271.9 262 56.1
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 4.9e-71 271.9 262 55.7
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 8.4e-71 271.2 262 56.1
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 1.9e-70 270.0 261 55.6
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 1.9e-70 270.0 262 56.1
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 3.2e-70 269.2 269 54.6
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 4.2e-70 268.9 261 55.9
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 5.4e-70 268.5 262 56.1
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 5.4e-70 268.5 261 57.1
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 1.6e-69 266.9 260 54.2
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 2.1e-69 266.5 263 53.6
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 4.6e-69 265.4 260 54.2
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 6.0e-69 265.0 260 53.8
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 7.9e-69 264.6 260 53.8
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 7.9e-69 264.6 260 53.8
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 7.9e-69 264.6 261 56.7
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.0e-68 264.2 262 55.0
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 1.0e-68 264.2 260 53.8
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.0e-68 264.2 260 53.8
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 1.0e-68 264.2 288 52.8
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 1.0e-68 264.2 261 55.2
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.7e-68 263.5 261 56.3
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 2.3e-68 263.1 261 55.9
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.3e-68 263.1 260 53.8
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 3.0e-68 262.7 261 55.9
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 3.0e-68 262.7 261 55.9
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 3.0e-68 262.7 258 55.8
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 6.6e-68 261.5 262 53.8
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 8.7e-68 261.2 261 53.3
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 1.5e-67 260.4 259 55.6
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 3.3e-67 259.2 261 55.2
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 3.3e-67 259.2 251 56.2
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 4.3e-67 258.8 262 54.6
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 5.6e-67 258.5 262 55.3
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 5.6e-67 258.5 261 55.2
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 5.6e-67 258.5 261 55.2
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 1.3e-66 257.3 260 51.5
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 1.6e-66 256.9 262 55.3
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.6e-66 256.9 261 54.8
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 2.1e-66 256.5 261 54.8
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 2.8e-66 256.1 261 54.8
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 2.8e-66 256.1 261 54.8
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 2.8e-66 256.1 261 54.8
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 2.8e-66 256.1 261 54.8
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 4.8e-66 255.4 261 54.8
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 4.8e-66 255.4 261 54.8
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 4.8e-66 255.4 261 53.3
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 8.1e-66 254.6 261 52.9
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.8e-65 253.4 261 52.9
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 5.3e-65 251.9 265 52.5
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 5.3e-65 251.9 281 50.5
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.5e-64 250.4 261 52.1
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.5e-64 250.4 261 52.1
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 1.5e-64 250.4 258 51.9
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 2.0e-64 250.0 261 53.6
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 2.0e-64 250.0 261 53.6
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 2.6e-64 249.6 263 53.6
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 2.6e-64 249.6 261 52.5
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 3.4e-64 249.2 261 52.9
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 4.5e-64 248.8 260 50.4
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 5.8e-64 248.4 262 51.5
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 7.6e-64 248.1 260 54.6
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 1.3e-63 247.3 261 52.9
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.7e-63 246.9 249 54.2
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 1.7e-63 246.9 249 54.2
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 1.7e-63 246.9 248 56.5
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.2e-63 246.5 260 53.8
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 4.9e-63 245.4 260 54.2
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.4e-62 243.8 249 54.2
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 4.2e-62 242.3 261 52.1
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 5.5e-62 241.9 262 52.3
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 7.1e-62 241.5 257 53.3
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 7.9e-61 238.0 249 53.4
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 7.9e-61 238.0 260 51.5
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.0e-60 237.7 257 52.9
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 1.3e-60 237.3 249 52.2
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 2.3e-60 236.5 260 50.0
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 3.9e-60 235.7 260 49.2
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 3.9e-60 235.7 250 52.0
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 5.1e-60 235.3 260 51.2
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.5e-59 233.8 257 51.0
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 3.3e-59 232.6 260 49.6
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 9.6e-59 231.1 260 50.8
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 1.3e-58 230.7 287 47.7
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 3.7e-58 229.2 293 47.8
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.7e-58 229.2 257 50.6
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 4.8e-58 228.8 322 43.5
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 2.9e-55 219.5 259 49.0
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 2.9e-55 219.5 259 49.4
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 3.8e-55 219.2 262 48.9
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.2e-53 214.2 261 47.9
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 7.9e-53 211.5 259 47.5
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.3e-52 210.7 256 46.9
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 6.7e-52 208.4 261 47.1
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 2.5e-51 206.5 257 46.3
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 7.4e-51 204.9 261 44.4
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 1.3e-50 204.1 263 46.0
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 6.3e-50 201.8 263 43.3
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 8.2e-50 201.4 258 45.7
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 3.1e-49 199.5 223 50.2
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 1.5e-48 197.2 268 44.4
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.0e-47 194.5 251 44.6
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 3.8e-47 192.6 258 41.9
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 3.8e-47 192.6 117 78.6
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 2.7e-45 186.4 228 47.4
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 1.0e-44 184.5 144 63.9
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.3e-44 183.3 261 44.1
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 3.3e-43 179.5 259 40.9
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 1.6e-37 160.6 256 38.3
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.7e-34 150.6 201 45.3
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 3.7e-34 149.4 195 48.7
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.4e-32 142.9 133 54.1
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 2.2e-31 140.2 252 36.1
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 5.5e-30 135.6 104 66.3
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 7.2e-30 135.2 265 33.2
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 2.7e-29 133.3 119 55.5
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.0e-27 127.1 99 63.6
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.1e-25 118.2 119 52.1
Actinidia15652 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.6e-21 107.5 69 71.0
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 1.6e-21 107.5 79 64.6
Lsat_1_v5_gn_2_70781 Lactuca sativa HOM05D003501 ORTHO05D004388 2.7e-21 106.7 79 63.3
Actinidia06069 Actinidia chinensis HOM05D003501 ORTHO05D004388 4.7e-21 105.9 252 31.7
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 4.1e-17 92.8 252 31.0
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 3.5e-16 89.7 80 52.5
EL10Ac2g02713 Beta vulgaris HOM05D003501 ORTHO05D004388 5.9e-16 89.0 74 59.5
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 7.2e-14 82.0 64 60.9
Lsat_1_v5_gn_2_114700 Lactuca sativa HOM05D003501 ORTHO05D004388 9.4e-14 81.6 64 60.9
HPP92_028227 Vanilla planifolia HOM05D003501 ORTHO05D004388 9.4e-14 81.6 70 58.6
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.6e-13 80.9 70 58.6
Lsat_1_v5_gn_6_85780 Lactuca sativa HOM05D003501 ORTHO05D004388 2.1e-13 80.5 69 56.5
Actinidia15651 Actinidia chinensis HOM05D003501 ORTHO05D004388 8.0e-13 78.6 63 55.6
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 2.6e-11 73.6 59 57.6
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.4e-11 73.2 55 60.0
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 8.3e-10 68.6 59 59.3
QL93p1877_0036 Quercus lobata HOM05D003501 ORTHO05D004388 1.1e-09 68.2 51 62.7
AL2G16720 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 1.8e-09 67.4 70 47.1
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.5e-08 62.8 86 43.0
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.7e-08 62.0 50 58.0
SEGI_12129 Sequoiadendron giganteum HOM05D003501 ORTHO05D004388 1.7e-07 60.8 66 43.9
A04p33800 Brassica napus HOM05D013914 ORTHO05D014484 6.5e-07 58.9 63 55.6
A06p42980 Brassica napus HOM05D013914 ORTHO05D014484 6.5e-07 58.9 63 55.6
A09p04740 Brassica napus HOM05D013914 ORTHO05D014484 6.5e-07 58.9 63 55.6
C04p00550 Brassica napus HOM05D013914 ORTHO05D014484 6.5e-07 58.9 56 55.4
BraA03t13299Z Brassica rapa HOM05D013914 ORTHO05D014484 6.5e-07 58.9 63 55.6
A03p60730 Brassica napus HOM05D013914 ORTHO05D014484 8.5e-07 58.5 73 46.6
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.5e-07 58.5 54 50.0
HPP92_027916 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.9e-06 57.4 53 56.6
BcaC09g51967 Brassica carinata HOM05D000049 ORTHO05D014484 9.4e-06 55.1 63 54.0


User provided reference genes

Program Settings