Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.31213D Arachis hypogaea HOM05D003738 ORTHO05D005143 4.8e-73 277.7 137 100.0
QL02p049823 Quercus lobata HOM05D003738 ORTHO05D005143 8.8e-11 70.9 45 71.1
arahy.Tifrunner.gnm1.ann1.UI9B1P Arachis hypogaea HOM05D003738 ORTHO05D005143 1.2e-10 70.5 45 73.3
Lj2g0012793 Lotus japonicus HOM05D003738 ORTHO05D005143 3.4e-10 68.9 45 71.1
Lalb_Chr02g0160571 Lupinus albus HOM05D003738 ORTHO05D005143 5.7e-10 68.2 45 68.9
Cpa.g.sc170.16 Carica papaya HOM05D003738 ORTHO05D005143 9.8e-10 67.4 45 68.9
MSTRG.15310 Avicennia marina HOM05D003738 ORTHO05D005143 1.3e-09 67.0 45 66.7
ClCG07G016430 Citrullus lanatus HOM05D003738 ORTHO05D005143 1.3e-09 67.0 45 66.7
Sed0022193 Sechium edule HOM05D003738 ORTHO05D005143 1.3e-09 67.0 45 66.7
SGA_v2.0_scaffold329G48870 Striga asiatica HOM05D003738 ORTHO05D005143 1.3e-09 67.0 45 68.9
CANSAT78G1141 Cannabis sativa HOM05D003738 ORTHO05D005143 1.7e-09 66.6 45 68.9
EL10Ac2g04518 Beta vulgaris HOM05D003738 ORTHO05D005143 2.2e-09 66.2 45 66.7
BcaC04g18797 Brassica carinata HOM05D003738 ORTHO05D005143 2.8e-09 65.9 45 66.7
A10p22030 Brassica napus HOM05D003738 ORTHO05D005143 2.8e-09 65.9 45 66.7
C09p59780 Brassica napus HOM05D003738 ORTHO05D005143 2.8e-09 65.9 45 66.7
BolC9t58818H Brassica oleracea HOM05D003738 ORTHO05D005143 2.8e-09 65.9 45 66.7
BraA10t44260Z Brassica rapa HOM05D003738 ORTHO05D005143 2.8e-09 65.9 45 66.7
Carub.0006s1559 Capsella rubella HOM05D003738 ORTHO05D005143 2.8e-09 65.9 45 66.7
CARHR195830 Cardamine hirsuta HOM05D003738 ORTHO05D005143 2.8e-09 65.9 45 66.7
Ca_04135_v3 Cicer arietinum L. HOM05D003738 ORTHO05D005143 2.8e-09 65.9 45 64.4
Thhalv10013104m.g Eutrema salsugineum HOM05D003738 ORTHO05D005143 2.8e-09 65.9 45 66.7
Glyma.02G238800 Glycine max HOM05D003738 ORTHO05D005143 2.8e-09 65.9 45 66.7
HPP92_003826 Vanilla planifolia HOM05D003738 ORTHO05D005143 2.8e-09 65.9 45 66.7
Aa31LG11G12270 Aethionema arabicum HOM05D003738 ORTHO05D005143 3.7e-09 65.5 45 66.7
AL6G28450 Arabidopsis lyrata HOM05D003738 ORTHO05D005143 3.7e-09 65.5 45 66.7
AT5G17380 Arabidopsis thaliana HOM05D003738 ORTHO05D005143 3.7e-09 65.5 45 66.7
ECA238G0020 Erigeron canadensis HOM05D003738 ORTHO05D005143 3.7e-09 65.5 45 66.7
Glyma.14G207700 Glycine max HOM05D003738 ORTHO05D005143 3.7e-09 65.5 45 66.7
Aqoxy3G00165 Aquilegia oxysepala HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 64.4
CAN.G625.63 Capsicum annuum HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
AUR62023216 Chenopodium quinoa HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 64.4
AUR62023263 Chenopodium quinoa HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 64.4
Dinv14852 Davidia involucrata HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
Migut.L00189 Erythranthe guttata HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 64.4
HanXRQChr07g0193781 Helianthus annuus HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
Nitab4.5_0002456g0020 Nicotiana tabacum HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
Nitab4.5_0007290g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
Nitab4.5_0011323g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
PSO017G1959 Papaver somniferum HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
PSO170G1643 Papaver somniferum HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
PSO455G0115 Papaver somniferum HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
Peaxi162Scf00458g00011 Petunia axillaris HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
Phvul.008G243200 Phaseolus vulgaris HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
Hund13699 Selenicereus undatus HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 64.4
Sc10g0001020 Simmondsia chinensis HOM05D003738 ORTHO05D005143 4.8e-09 65.1 52 63.5
Solyc02g091100.3 Solanum lycopersicum HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
Sopen02g035750 Solanum pennellii HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
PGSC0003DMG400030633 Solanum tuberosum HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
TAR374G1203 Trochodendron aralioides HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
VMungo0647G1516 Vigna mungo HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
GSVIVG01013575001 Vitis vinifera HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
GSVIVG01030948001 Vitis vinifera HOM05D003738 ORTHO05D005143 4.8e-09 65.1 45 66.7
arahy.Tifrunner.gnm1.ann1.KYQ4XK Arachis hypogaea HOM05D003738 ORTHO05D005143 6.3e-09 64.7 45 68.9
BcaB08g36776 Brassica carinata HOM05D003738 ORTHO05D005143 6.3e-09 64.7 45 64.4
FvH4_1g28990 Fragaria vesca HOM05D003738 ORTHO05D005143 6.3e-09 64.7 45 66.7
FAN19G0768 Fragaria x ananassa HOM05D003738 ORTHO05D005143 6.3e-09 64.7 45 66.7
FAN23G1334 Fragaria x ananassa HOM05D003738 ORTHO05D005143 6.3e-09 64.7 45 66.7
FAN26G1505 Fragaria x ananassa HOM05D003738 ORTHO05D005143 6.3e-09 64.7 45 66.7
Nn4g24034 Nelumbo nucifera HOM05D003738 ORTHO05D005143 6.3e-09 64.7 45 66.7
COL.COLO4_12270 Corchorus olitorius HOM05D003738 ORTHO05D005143 8.3e-09 64.3 45 66.7
MBI16_g21165_MAGBIO Magnolia biondii HOM05D003738 ORTHO05D005143 8.3e-09 64.3 45 64.4
Atru.chr1.1579 Acer truncatum HOM05D003738 ORTHO05D005143 1.1e-08 63.9 45 66.7
CDE06G1483 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 1.1e-08 63.9 52 55.8
CDE07G0683 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 1.1e-08 63.9 52 55.8
COL.COLO4_27155 Corchorus olitorius HOM05D003738 ORTHO05D005143 1.1e-08 63.9 45 66.7
CsaV3_4G010390 Cucumis sativus L. HOM05D003738 ORTHO05D005143 1.1e-08 63.9 45 64.4
MD00G1054500 Malus domestica HOM05D003738 ORTHO05D005143 1.1e-08 63.9 45 66.7
Oeu061823.1 Olea europaea HOM05D003738 ORTHO05D005143 1.1e-08 63.9 45 64.4
Potri.004G094600 Populus trichocarpa HOM05D003738 ORTHO05D005143 1.1e-08 63.9 45 66.7
Prupe.3G150000 Prunus persica HOM05D003738 ORTHO05D005143 1.1e-08 63.9 45 66.7
Psat1g052800 Pisum sativum HOM05D003738 ORTHO05D005143 1.4e-08 63.5 45 62.2
Sp6g26840 Schrenkiella parvula HOM05D003738 ORTHO05D005143 1.4e-08 63.5 45 64.4
Actinidia36345 Actinidia chinensis HOM05D003738 ORTHO05D005143 1.8e-08 63.2 45 64.4
arahy.Tifrunner.gnm1.ann1.8AFI1C Arachis hypogaea HOM05D003738 ORTHO05D005143 1.8e-08 63.2 45 66.7
Cc07_g08440 Coffea canephora HOM05D003738 ORTHO05D005143 1.8e-08 63.2 45 64.4
Dinv34815 Davidia involucrata HOM05D003738 ORTHO05D005143 1.8e-08 63.2 45 64.4
Peaxi162Scf00129g00317 Petunia axillaris HOM05D003738 ORTHO05D005143 1.8e-08 63.2 45 64.4
RcHm_v2.0_Chr3g0494041 Rosa chinensis HOM05D003738 ORTHO05D005143 1.8e-08 63.2 45 66.7
Sabra04G0063900 Salix brachista HOM05D003738 ORTHO05D005143 1.8e-08 63.2 45 66.7
SalBow4G0814 Salvia bowleyana HOM05D003738 ORTHO05D005143 1.8e-08 63.2 45 64.4
TPR.G25203 Trifolium pratense HOM05D003738 ORTHO05D005143 1.8e-08 63.2 45 62.2
TWI74G0253 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 1.8e-08 63.2 45 64.4
AagrBONN_evm.TU.Sc2ySwM_369.580 Anthoceros agrestis HOM05D003738 ORTHO05D005143 2.4e-08 62.8 45 62.2
arahy.Tifrunner.gnm1.ann1.J2B3IW Arachis hypogaea HOM05D003738 ORTHO05D005143 2.4e-08 62.8 62 58.1
Lalb_Chr06g0176761 Lupinus albus HOM05D003738 ORTHO05D005143 2.4e-08 62.8 45 66.7
TWI77G0590 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 2.4e-08 62.8 45 64.4
Ah.16g101450 Amaranthus hybridus HOM05D003738 ORTHO05D005143 3.1e-08 62.4 45 60.0
arahy.Tifrunner.gnm1.ann1.EHW2CP Arachis hypogaea HOM05D003738 ORTHO05D005143 3.1e-08 62.4 61 59.0
Gohir.A11G166650 Gossypium hirsutum HOM05D003738 ORTHO05D005143 3.1e-08 62.4 45 64.4
Gohir.D11G173000 Gossypium hirsutum HOM05D003738 ORTHO05D005143 3.1e-08 62.4 45 64.4
Gorai.007G185300 Gossypium raimondii HOM05D003738 ORTHO05D005143 3.1e-08 62.4 45 64.4
MD09G1258100 Malus domestica HOM05D003738 ORTHO05D005143 3.1e-08 62.4 45 62.2
Manes.01G113700 Manihot esculenta HOM05D003738 ORTHO05D005143 4.1e-08 62.0 45 66.7
Ciclev10011371m.g Citrus clementina HOM05D003738 ORTHO05D005143 5.4e-08 61.6 45 64.4
Rhsim10G0076800 Rhododendron simsii HOM05D003738 ORTHO05D005143 5.4e-08 61.6 45 64.4
ATR0057G018 Amborella trichopoda HOM05D003738 ORTHO05D005143 7.0e-08 61.2 45 60.0
Lsat_1_v5_gn_2_80860 Lactuca sativa HOM05D003738 ORTHO05D005143 7.0e-08 61.2 45 64.4
MELO3C010381.2 Cucumis melo HOM05D003738 ORTHO05D005143 9.1e-08 60.8 45 62.2
Rhsim05G0052500 Rhododendron simsii HOM05D003738 ORTHO05D005143 9.1e-08 60.8 45 62.2
THA.LOC104820853 Tarenaya hassleriana HOM05D003738 ORTHO05D005143 9.1e-08 60.8 45 62.2
vmacro05488 Vaccinium macrocarpon HOM05D003738 ORTHO05D005143 9.1e-08 60.8 45 64.4
Lj2A438T57 Lonicera japonica HOM05D003738 ORTHO05D005143 1.2e-07 60.5 45 62.2
Medtr6g004200 Medicago truncatula HOM05D003738 ORTHO05D005143 1.2e-07 60.5 45 60.0
SEGI_09825 Sequoiadendron giganteum HOM05D003738 ORTHO05D005143 1.6e-07 60.1 45 60.0
CSS0050020 Camellia sinensis var. sinensis HOM05D003738 ORTHO05D005143 2.0e-07 59.7 45 62.2
Haze_14195 Corylus avellana HOM05D003738 ORTHO05D005143 2.0e-07 59.7 45 57.8
Eucgr.F02797 Eucalyptus grandis HOM05D003738 ORTHO05D005143 2.0e-07 59.7 45 62.2
CiPaw.03G065800 Carya illinoinensis HOM05D003738 ORTHO05D005143 2.7e-07 59.3 45 60.0
Rhsim10G0074000 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.7e-07 59.3 45 62.2
Ciclev10013371m.g Citrus clementina HOM05D003738 ORTHO05D005143 4.5e-07 58.5 45 62.2
arahy.Tifrunner.gnm1.ann1.3J26XN Arachis hypogaea HOM05D003738 ORTHO05D005143 5.9e-07 58.2 43 65.1
Duzib138G1092 Durio zibethinus HOM05D003738 ORTHO05D005143 5.9e-07 58.2 45 57.8
SHI25638 Sapria himalayana HOM05D003738 ORTHO05D005143 5.9e-07 58.2 45 62.2
HanXRQChr02g0040721 Helianthus annuus HOM05D003738 ORTHO05D005143 7.7e-07 57.8 45 60.0
Zm00001eb336870 Zea mays HOM05D003738 ORTHO05D005143 1.0e-06 57.4 45 57.8
Mapoly0099s0049 Marchantia polymorpha HOM05D003738 ORTHO05D005143 1.3e-06 57.0 45 60.0
arahy.Tifrunner.gnm1.ann1.85I739 Arachis hypogaea HOM05D003738 ORTHO05D005143 1.7e-06 56.6 57 56.1
Cfa007882 Carpinus fangiana HOM05D003738 ORTHO05D005143 1.7e-06 56.6 45 55.6
Pp3c3_25360 Physcomitrium patens HOM05D003738 ORTHO05D005143 1.7e-06 56.6 52 53.8
Rhsim10G0075800 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.9e-06 55.8 45 60.0
arahy.Tifrunner.gnm1.ann1.E0ZWVI Arachis hypogaea HOM05D003738 ORTHO05D005143 3.8e-06 55.5 75 45.3
TAR629G2166 Trochodendron aralioides HOM05D003738 ORTHO05D005143 3.8e-06 55.5 45 55.6
arahy.Tifrunner.gnm1.ann1.YP6RFP Arachis hypogaea HOM05D003738 ORTHO05D005143 6.6e-06 54.7 45 60.0
Duzib133G1513 Durio zibethinus HOM05D003738 ORTHO05D005143 8.6e-06 54.3 45 57.8


User provided reference genes

Program Settings