Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 0.0e+00 1182.2 646 100.0
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 5.7e-294 1013.8 569 97.4
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 4.7e-203 711.8 573 74.5
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 4.4e-193 678.7 625 67.2
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 1.7e-189 666.8 592 69.3
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.4e-186 657.1 640 65.0
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 1.3e-181 640.6 683 60.3
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 5.0e-181 638.6 681 59.3
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 2.5e-180 636.3 549 70.5
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 1.6e-166 590.5 611 63.7
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 8.9e-162 574.7 571 60.2
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 4.1e-159 565.8 584 61.3
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 7.0e-159 565.1 612 54.1
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 1.7e-157 560.5 575 56.9
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 2.1e-155 553.5 674 54.9
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 1.4e-154 550.8 578 56.4
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 4.0e-154 549.3 578 58.7
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 6.8e-154 548.5 574 58.7
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 6.8e-154 548.5 575 55.7
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 2.6e-153 546.6 594 56.7
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.1e-151 541.2 608 57.7
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 1.2e-150 537.7 577 58.8
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 1.6e-150 537.3 591 54.7
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 2.1e-150 537.0 581 55.9
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 5.1e-149 532.3 581 57.0
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 4.3e-148 529.3 579 58.4
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 9.5e-148 528.1 368 82.3
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 1.2e-147 527.7 585 58.8
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 2.8e-147 526.6 649 53.9
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 4.9e-144 515.8 654 52.9
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 6.4e-144 515.4 586 54.9
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 2.4e-143 513.5 603 56.1
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 9.2e-143 511.5 581 59.4
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 1.5e-140 504.2 569 57.3
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 9.6e-140 501.5 583 53.5
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 1.2e-139 501.1 610 56.1
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 2.1e-139 500.4 574 55.6
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 6.2e-139 498.8 610 55.6
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.1e-138 498.0 601 55.7
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 1.4e-138 497.7 597 51.9
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 5.2e-138 495.7 380 70.3
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 1.9e-135 487.3 595 53.8
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.4e-135 486.9 593 52.6
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 6.0e-134 482.3 588 56.0
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 6.0e-134 482.3 511 56.2
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 3.0e-133 479.9 379 73.4
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 4.3e-132 476.1 635 50.6
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 2.1e-131 473.8 304 74.3
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 1.8e-130 470.7 599 52.6
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 8.4e-128 461.8 613 46.5
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 1.1e-127 461.5 652 50.9
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 1.4e-127 461.1 303 72.3
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 3.2e-127 459.9 384 68.8
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 5.4e-127 459.1 538 54.8
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 9.3e-127 458.4 627 49.8
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 1.2e-126 458.0 614 47.9
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 5.1e-125 452.6 563 51.3
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.5e-124 451.1 560 51.8
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 3.3e-124 449.9 302 71.2
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 7.4e-124 448.7 582 51.9
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 1.4e-122 444.5 608 50.2
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 5.3e-122 442.6 567 52.6
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 5.3e-122 442.6 567 52.6
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 9.0e-122 441.8 562 54.3
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 1.2e-121 441.4 572 50.9
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 2.0e-121 440.7 365 61.1
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 9.9e-121 438.3 567 52.2
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 9.9e-121 438.3 485 51.8
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 2.9e-120 436.8 562 53.4
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 3.8e-120 436.4 561 52.4
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.8e-120 436.4 572 52.1
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 4.9e-120 436.0 482 57.3
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 1.4e-119 434.5 599 50.3
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.9e-119 434.1 561 53.3
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 3.2e-119 433.3 559 51.0
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 2.7e-118 430.3 572 52.4
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 4.6e-118 429.5 620 47.7
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 6.0e-118 429.1 428 58.6
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 6.7e-117 425.6 629 46.6
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 1.9e-116 424.1 302 66.6
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 4.3e-116 422.9 588 49.3
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 3.7e-115 419.9 567 46.4
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 4.8e-115 419.5 568 47.9
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 6.2e-115 419.1 275 71.3
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 4.5e-113 412.9 302 65.2
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 7.1e-111 405.6 393 57.8
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 3.5e-110 403.3 305 65.6
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 3.3e-108 396.7 609 45.3
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 4.3e-108 396.4 555 49.0
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 8.4e-104 382.1 646 42.1
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.6e-102 377.9 568 47.2
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 6.7e-101 372.5 305 60.3
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 6.7e-101 372.5 299 59.2
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 2.0e-97 360.9 443 47.6
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 2.6e-97 360.5 561 45.8
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 5.9e-97 359.4 442 52.3
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 1.3e-96 358.2 434 50.2
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 3.6e-94 350.1 296 56.1
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 6.1e-94 349.4 571 45.7
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 1.1e-92 345.1 441 49.7
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 1.5e-92 344.7 441 45.6
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 1.5e-92 344.7 441 45.6
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 2.2e-91 340.9 301 55.1
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 2.8e-91 340.5 441 48.8
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 3.7e-91 340.1 413 47.2
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 8.5e-88 328.9 496 46.4
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 3.2e-87 327.0 304 55.6
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.8e-85 321.2 635 40.3
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 2.2e-80 304.3 441 51.5
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 8.5e-80 302.4 553 41.6
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 1.2e-78 298.5 300 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 6.7e-77 292.7 327 47.7
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 2.2e-75 287.7 327 44.6
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.6e-70 271.6 604 36.3
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 1.8e-69 268.1 326 41.7
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.7e-62 243.4 252 62.3
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.9e-59 233.4 277 52.7
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 6.1e-54 216.5 260 43.8
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 2.9e-51 207.6 123 82.1
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 1.2e-41 175.6 257 37.7
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 1.5e-39 168.7 198 54.0
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 2.0e-36 158.3 278 37.1
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 6.2e-30 136.7 98 67.3
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 5.8e-28 130.2 184 41.3
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 5.1e-24 117.1 72 79.2
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.8e-19 100.9 326 32.5
arahy.Tifrunner.gnm1.ann1.MP6I0Q Arachis hypogaea HOM05D010382 ORTHO05D005864 7.1e-18 96.7 77 75.3
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.1e-17 95.1 62 67.7
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 5.1e-16 90.5 112 46.4
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 1.5e-15 89.0 57 68.4
arahy.Tifrunner.gnm1.ann1.TDW0BY Arachis hypogaea HOM05D005185 ORTHO05D006075 2.4e-13 81.6 79 64.6
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 3.1e-13 81.3 62 75.8
arahy.Tifrunner.gnm1.ann1.BJCX7Z Arachis hypogaea HOM05D010382 ORTHO05D005864 5.3e-13 80.5 64 78.1
arahy.Tifrunner.gnm1.ann1.L57236 Arachis hypogaea HOM05D007085 ORTHO05D008828 6.9e-13 80.1 78 65.4
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 7.6e-12 76.6 42 95.2
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 8.4e-11 73.2 337 35.9
arahy.Tifrunner.gnm1.ann1.689Y8G Arachis hypogaea HOM05D005570 ORTHO05D005864 1.4e-10 72.4 50 86.0
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 3.2e-10 71.2 86 59.3
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 7.1e-10 70.1 46 89.1
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.6e-09 68.9 59 55.9
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 1.6e-09 68.9 45 75.6
arahy.Tifrunner.gnm1.ann1.NQ2DUC Arachis hypogaea HOM05D005570 ORTHO05D005864 2.1e-09 68.6 80 56.2
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 2.7e-09 68.2 46 87.0
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 2.7e-09 68.2 56 75.0
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 1.0e-08 66.2 46 84.8
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 1.0e-08 66.2 125 44.8
arahy.Tifrunner.gnm1.ann1.5875FQ Arachis hypogaea HOM05D005570 ORTHO05D005864 1.3e-08 65.9 46 84.8
arahy.Tifrunner.gnm1.ann1.VY1HWT Arachis hypogaea HOM05D005692 ORTHO05D006953 1.8e-08 65.5 57 73.7
arahy.Tifrunner.gnm1.ann1.093KP0 Arachis hypogaea HOM05D002360 ORTHO05D006297 2.3e-08 65.1 42 88.1
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 5.1e-08 63.9 53 54.7
arahy.Tifrunner.gnm1.ann1.H2MGKB Arachis hypogaea HOM05D010382 ORTHO05D005864 8.7e-08 63.2 65 63.1
arahy.Tifrunner.gnm1.ann1.JXA9IA Arachis hypogaea HOM05D005570 ORTHO05D005864 8.7e-08 63.2 46 82.6
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.1e-07 62.8 75 42.7
arahy.Tifrunner.gnm1.ann1.QI3CHY Arachis hypogaea HOM05D005570 ORTHO05D005864 1.9e-07 62.0 70 61.4
arahy.Tifrunner.gnm1.ann1.9DH571 Arachis hypogaea HOM05D016340 ORTHO05D005864 2.5e-07 61.6 46 80.4
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 3.3e-07 61.2 52 73.1
arahy.Tifrunner.gnm1.ann1.TQSI6C Arachis hypogaea HOM05D005570 ORTHO05D005864 4.8e-06 57.4 44 81.8


User provided reference genes

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