Gene: AT2G22140
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G22140
- Transcript Identifier AT2G22140.1
- Gene Type Coding gene
- Location Chr2 : 9414895-9418584 : negative
Gene Family Information
- ID HOM05D005778
- #Genes/#Species 135/93
- Phylogenetic origin
- ID ORTHO05D007245
- #Genes/#Species 133/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT2G22140.1
- symbol EME1B
- Alias ATEME1B,essential meiotic endonuclease 1B
- uniprot C5H8J1
Descriptions
- Description essential meiotic endonuclease 1B
- Computational description essential meiotic endonuclease 1B (EME1B); CONTAINS InterPro DOMAIN/s: ERCC4 domain (InterPro:IPR006166); BEST Arabidopsis thaliana protein match is: essential meiotic endonuclease 1A (TAIR:AT2G21800.1); Has 542 Blast hits to 486 proteins in 142 species: Archae - 0; Bacteria - 42; Metazoa - 170; Fungi - 104; Plants - 48; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010332 | ISO | PLAZA Integrative Orthology | response to gamma radiation | Os04g0648700 |
| GO:0009411 | ISO | PLAZA Integrative Orthology | response to UV | Os04g0648700 |
| GO:0009644 | ISO | PLAZA Integrative Orthology | response to high light intensity | Os04g0648700 |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IDA | Gene Ontology | DNA repair | 1 |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0051321 | IEA | GOA Database | meiotic cell cycle | |
| GO:0051301 | IEA | GOA Database | cell division | |
| GO:0007049 | IEA | GOA Database | cell cycle | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006310 | IEA | GOA Database | DNA recombination | |
| GO:0006310 | IDA | Gene Ontology | DNA recombination | 1 |
| GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0004518 | IEA | GOA Database | nuclease activity | |
| GO:0004518 | IEA | InterPro | nuclease activity | |
| GO:0003677 | IEA | Gene Ontology | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0004519 | IEA | GOA Database | endonuclease activity | |
| GO:0004519 | IDA | Gene Ontology | endonuclease activity | 1 |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048476 | IEA | Gene Ontology | Holliday junction resolvase complex | |
| GO:0048476 | IEA | InterPro | Holliday junction resolvase complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 13.3.5.5.2.1.1.2 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.component EME1 |