Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 9.8e-211 736.5 360 100.0
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.6e-208 729.2 360 98.6
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.5e-174 616.3 351 82.9
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 2.8e-173 612.1 351 82.1
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 1.9e-166 589.3 349 79.9
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.8e-165 585.5 351 80.1
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 1.8e-164 582.8 351 79.2
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 9.0e-164 580.5 351 78.6
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.0e-162 577.0 351 78.6
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 2.7e-160 568.9 362 77.3
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.5e-158 563.1 351 76.6
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 3.8e-154 548.5 339 76.7
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 3.4e-147 525.4 352 71.3
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.1e-142 510.4 360 68.1
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.5e-142 510.0 360 68.3
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 1.3e-141 506.9 358 69.3
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 4.8e-141 505.0 360 66.7
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 6.3e-141 504.6 359 66.9
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 3.1e-140 502.3 351 68.9
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.3e-138 496.9 362 68.2
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 3.8e-138 495.4 362 66.6
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 1.5e-137 493.4 359 66.3
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 1.5e-137 493.4 366 66.1
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.2e-137 491.9 365 66.3
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.6e-136 490.0 365 64.1
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 2.7e-136 489.2 361 66.2
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.7e-136 489.2 359 65.5
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.8e-135 486.5 364 63.7
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.8e-135 486.5 348 67.2
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 3.0e-135 485.7 365 63.3
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.0e-135 485.7 362 66.6
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.9e-135 485.3 362 66.3
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 8.8e-135 484.2 359 66.0
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.1e-134 483.8 372 64.5
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 2.0e-134 483.0 360 65.3
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 5.7e-134 481.5 355 67.3
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 9.7e-134 480.7 367 63.2
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.3e-133 480.3 366 65.0
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.7e-133 479.9 366 63.7
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.7e-133 478.8 354 66.9
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.4e-132 476.1 359 66.0
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 3.1e-132 475.7 362 64.1
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 5.3e-132 474.9 367 64.9
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.2e-131 473.8 321 68.5
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 2.6e-131 472.6 342 65.8
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 2.6e-131 472.6 360 64.4
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 7.7e-131 471.1 347 65.7
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 2.2e-130 469.5 367 62.7
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 5.0e-130 468.4 345 64.3
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 2.5e-129 466.1 359 61.6
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 5.5e-129 464.9 367 61.6
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 4.7e-128 461.8 355 61.4
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 4.7e-128 461.8 347 62.2
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 3.0e-127 459.1 344 62.2
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 4.0e-127 458.8 367 61.0
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 5.2e-127 458.4 355 63.9
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 5.2e-127 458.4 432 54.2
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.5e-126 456.8 344 64.0
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 2.0e-126 456.4 338 64.5
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 2.6e-126 456.1 345 62.0
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 1.3e-125 453.8 346 63.0
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 2.2e-125 453.0 345 61.7
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 4.8e-125 451.8 346 62.4
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 6.3e-125 451.4 345 62.0
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 6.3e-125 451.4 345 62.0
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 6.3e-125 451.4 356 60.7
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 8.3e-125 451.1 344 62.5
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 2.4e-124 449.5 485 50.7
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 4.1e-124 448.7 354 61.0
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 5.4e-124 448.4 347 60.5
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 2.0e-123 446.4 353 62.0
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 2.0e-123 446.4 353 62.0
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.7e-123 446.0 348 60.9
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.9e-123 444.9 407 53.8
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 7.7e-123 444.5 346 61.0
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 1.0e-122 444.1 346 61.3
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.7e-122 443.4 357 61.9
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 1.7e-122 443.4 355 61.7
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 3.8e-122 442.2 342 61.4
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.9e-121 439.9 343 61.2
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 2.5e-121 439.5 343 61.2
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 1.2e-120 437.2 346 59.5
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.4e-119 433.7 361 59.3
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 3.0e-119 432.6 348 63.2
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 2.6e-118 429.5 363 60.6
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 4.4e-118 428.7 363 60.3
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 4.4e-118 428.7 321 65.7
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 2.8e-117 426.0 352 59.4
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 3.7e-117 425.6 432 51.6
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 9.1e-116 421.0 387 54.5
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.2e-115 420.6 356 60.4
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 3.5e-115 419.1 295 68.5
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.0e-111 406.0 359 57.1
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.0e-110 403.3 353 56.7
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.3e-109 400.6 285 64.9
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 2.9e-109 399.4 339 58.1
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 2.9e-109 399.4 358 53.9
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 2.4e-108 396.4 265 69.1
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.2e-107 394.0 371 55.3
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 4.6e-107 392.1 360 51.7
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 4.3e-105 385.6 351 56.7
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 4.1e-100 369.0 391 48.1
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 5.4e-100 368.6 319 58.6
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 5.4e-100 368.6 360 54.7
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 3.2e-92 342.8 357 51.8
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 5.4e-92 342.0 247 66.0
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 7.8e-91 338.2 293 59.4
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 2.1e-88 330.1 428 41.8
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 1.2e-86 324.3 206 72.3
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 8.4e-85 318.2 293 57.0
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 9.2e-84 314.7 209 70.3
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.2e-78 297.7 379 41.7
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.5e-78 297.4 420 39.0
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 2.2e-77 293.5 347 47.0
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 5.1e-74 282.3 350 42.3
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 1.3e-72 277.7 157 75.8
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 8.1e-72 275.0 226 61.5
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 1.1e-60 238.0 129 81.4
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 4.6e-59 232.6 127 78.7
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 6.5e-53 212.2 255 45.5
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 6.5e-53 212.2 255 45.5
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 3.7e-48 196.4 189 54.0
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 3.7e-48 196.4 189 54.0
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 2.1e-43 180.6 180 52.2
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 2.5e-41 173.7 194 50.0
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 1.6e-40 171.0 135 54.1
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 6.5e-37 159.1 83 85.5
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 2.1e-27 127.5 112 57.1
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.8e-26 124.4 75 73.3
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.7e-21 107.8 145 45.5
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.7e-19 99.8 120 44.2
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 4.7e-19 99.8 206 32.0
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.5e-09 68.2 108 40.7


User provided reference genes

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