Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 8.6e-274 946.4 497 100.0
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 4.8e-264 914.1 506 94.1
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 1.3e-216 756.5 504 79.8
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 4.1e-215 751.5 505 79.2
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 5.3e-215 751.1 501 80.0
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 5.0e-213 744.6 501 78.6
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 9.4e-212 740.3 510 78.2
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 2.7e-211 738.8 522 77.2
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 3.6e-211 738.4 495 78.4
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 8.0e-211 737.3 508 77.0
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 5.2e-210 734.6 513 76.8
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 2.6e-209 732.3 505 78.6
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 1.3e-208 729.9 499 78.6
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 5.7e-201 704.5 498 75.9
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 3.7e-200 701.8 509 71.3
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 6.3e-200 701.0 463 76.2
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 7.0e-199 697.6 455 76.9
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 1.6e-198 696.4 453 76.6
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 1.6e-198 696.4 463 76.0
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 3.5e-198 695.3 455 76.3
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 5.9e-198 694.5 501 74.1
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 7.7e-198 694.1 437 80.1
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 1.9e-196 689.5 502 72.5
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 7.2e-196 687.6 444 79.3
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 1.6e-195 686.4 439 79.3
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 3.6e-195 685.3 511 71.0
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 8.0e-195 684.1 491 73.1
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 8.0e-195 684.1 448 76.6
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 1.0e-194 683.7 456 76.1
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 1.4e-194 683.3 457 77.0
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 2.3e-194 682.6 455 76.0
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 2.3e-194 682.6 482 72.8
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 7.5e-193 677.6 449 75.3
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 7.5e-193 677.6 482 72.2
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 2.8e-192 675.6 530 67.9
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 4.9e-192 674.9 433 77.8
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 4.9e-192 674.9 493 70.8
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 6.3e-192 674.5 433 77.6
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 6.3e-192 674.5 509 69.9
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 1.8e-191 672.9 444 74.3
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 9.2e-191 670.6 433 77.1
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 1.6e-190 669.8 433 76.9
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 5.9e-190 667.9 491 71.1
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 5.9e-190 667.9 515 69.7
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 5.9e-190 667.9 499 69.1
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 3.8e-189 665.2 436 75.0
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 8.6e-189 664.1 453 74.6
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.5e-188 663.3 433 78.8
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 2.5e-188 662.5 498 68.7
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 2.5e-188 662.5 460 73.0
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 4.3e-188 661.8 510 67.8
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 9.5e-188 660.6 461 72.2
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 9.5e-188 660.6 499 74.9
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 1.2e-187 660.2 460 72.4
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 1.6e-187 659.8 510 67.1
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.1e-187 659.4 433 76.2
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 2.8e-187 659.1 433 76.0
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 4.7e-187 658.3 499 69.7
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 4.7e-187 658.3 433 74.4
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 8.0e-187 657.5 461 71.6
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 3.0e-186 655.6 455 72.3
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 6.8e-186 654.4 515 66.8
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 1.2e-185 653.7 516 65.9
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 1.5e-185 653.3 434 75.8
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 1.5e-185 653.3 432 75.0
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 2.0e-185 652.9 434 75.8
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 2.6e-185 652.5 433 75.3
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 3.4e-185 652.1 510 66.3
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 3.4e-185 652.1 498 66.9
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 4.4e-185 651.7 510 66.3
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.7e-184 649.8 435 74.7
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 2.2e-184 649.4 510 66.1
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.2e-184 649.4 427 75.6
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 2.9e-184 649.0 457 71.1
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 2.9e-184 649.0 450 71.3
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 8.3e-184 647.5 450 70.9
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 3.2e-183 645.6 435 74.3
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 7.0e-183 644.4 510 65.7
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 2.7e-182 642.5 450 70.9
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 2.7e-182 642.5 450 70.9
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.3e-181 640.2 451 72.1
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.3e-181 640.2 451 72.1
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.3e-181 640.2 433 75.1
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 3.0e-181 639.0 456 71.9
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 3.0e-181 639.0 506 67.4
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 5.0e-181 638.3 576 60.4
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 8.6e-181 637.5 458 71.4
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 6.2e-179 631.3 453 71.3
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 8.0e-179 630.9 493 67.7
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.0e-177 626.3 448 69.2
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 2.6e-177 625.9 452 70.6
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 3.4e-177 625.5 449 68.8
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 3.4e-177 625.5 469 69.3
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 4.4e-177 625.2 466 68.5
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 7.5e-177 624.4 434 73.7
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 9.8e-177 624.0 481 66.9
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 1.3e-176 623.6 452 70.4
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 3.7e-176 622.1 455 68.8
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 1.4e-175 620.2 446 70.2
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.9e-175 619.8 517 63.6
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 2.4e-175 619.4 451 70.3
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 4.1e-175 618.6 518 63.7
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 5.4e-175 618.2 443 71.8
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 6.0e-174 614.8 425 78.1
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 6.6e-173 611.3 505 64.8
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 1.3e-165 587.0 430 68.1
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 1.6e-163 580.1 435 66.7
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 2.1e-163 579.7 435 65.1
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 5.8e-161 571.6 433 64.4
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 2.1e-158 563.1 441 67.1
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 4.3e-156 555.4 449 63.9
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 2.1e-150 536.6 454 58.1
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 2.7e-150 536.2 374 71.9
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.2e-145 520.8 308 83.1
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 2.9e-144 516.2 435 64.6
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 4.6e-142 508.8 436 59.4
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.1e-138 497.7 425 61.6
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 6.7e-133 478.4 499 51.1
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 4.2e-127 459.1 480 50.4
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 1.4e-114 417.5 462 54.3
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.7e-102 376.7 233 79.4
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 1.4e-85 321.2 410 47.1
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 4.5e-81 306.2 430 40.2
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 5.4e-74 282.7 253 57.3
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 1.3e-72 278.1 390 44.6
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 2.3e-69 267.3 208 63.5
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 5.7e-68 262.7 257 58.0
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 1.8e-66 257.7 336 48.5
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 7.0e-66 255.8 174 74.1
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 2.9e-59 233.8 451 32.2
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 3.5e-57 226.9 430 33.5
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.4e-50 204.9 159 65.4
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 1.2e-46 191.8 391 36.1
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 1.2e-36 158.7 131 63.4
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 9.9e-36 155.6 126 60.3
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.7e-33 147.5 96 74.0
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 3.9e-24 117.1 58 96.6
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 8.7e-24 115.9 112 54.5
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 4.3e-23 113.6 67 79.1
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 1.6e-17 95.1 70 65.7
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 2.1e-17 94.7 99 50.5
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 3.5e-17 94.0 141 44.0
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 1.3e-16 92.0 74 63.5
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 8.2e-14 82.8 49 79.6
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 8.2e-14 82.8 49 79.6
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 1.1e-13 82.4 64 64.1
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 4.5e-12 77.0 72 62.5
SEGI_20498 Sequoiadendron giganteum HOM05D037692 ORTHO05D385547 6.3e-06 56.6 47 59.6


User provided reference genes

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