Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.08AYB8 Arachis hypogaea HOM05D000228 ORTHO05D013010 2.3e-104 382.1 178 100.0
arahy.Tifrunner.gnm1.ann1.YWW8G9 Arachis hypogaea HOM05D000228 ORTHO05D013010 3.0e-43 179.1 214 49.1
arahy.Tifrunner.gnm1.ann1.K7S8RA Arachis hypogaea HOM05D000228 ORTHO05D013010 6.1e-28 128.3 98 66.3
arahy.Tifrunner.gnm1.ann1.RLQ4ZH Arachis hypogaea HOM05D000228 ORTHO05D013010 3.9e-27 125.6 97 61.9
arahy.Tifrunner.gnm1.ann1.WX3P41 Arachis hypogaea HOM05D000228 ORTHO05D006129 1.7e-25 120.2 99 58.6
arahy.Tifrunner.gnm1.ann1.RU3ERW Arachis hypogaea HOM05D000228 ORTHO05D006129 2.2e-25 119.8 99 58.6
Lalb_Chr05g0214761 Lupinus albus HOM05D000228 ORTHO05D006129 1.0e-19 100.9 100 51.0
arahy.Tifrunner.gnm1.ann1.ACP38X Arachis hypogaea HOM05D031798 ORTHO05D013010 6.7e-19 98.2 115 48.7
arahy.Tifrunner.gnm1.ann1.V4AZPZ Arachis hypogaea HOM05D031798 ORTHO05D013010 2.0e-18 96.7 50 86.0
Lalb_Chr09g0324731 Lupinus albus HOM05D000228 ORTHO05D006129 3.3e-18 95.9 99 50.5
MELO3C014034.2 Cucumis melo HOM05D000228 ORTHO05D006129 1.3e-17 94.0 100 42.0
CsaV3_3G003630 Cucumis sativus L. HOM05D000228 ORTHO05D006129 1.3e-17 94.0 100 41.0
ClCG00G000380 Citrullus lanatus HOM05D000228 ORTHO05D006129 1.7e-17 93.6 99 42.4
ClCG10G003630 Citrullus lanatus HOM05D000228 ORTHO05D006129 1.7e-17 93.6 99 42.4
arahy.Tifrunner.gnm1.ann1.D50IR8 Arachis hypogaea HOM05D000228 ORTHO05D013010 2.2e-17 93.2 86 55.8
Medtr5g011000 Medicago truncatula HOM05D000228 ORTHO05D006129 3.7e-17 92.4 133 38.3
Psat2g181400 Pisum sativum HOM05D000228 ORTHO05D006129 4.8e-17 92.0 99 47.5
Glyma.01G215700 Glycine max HOM05D000228 ORTHO05D006129 1.8e-16 90.1 95 47.4
arahy.Tifrunner.gnm1.ann1.HG0937 Arachis hypogaea HOM05D000228 ORTHO05D013010 4.1e-16 89.0 77 62.3
TPR.G33168 Trifolium pratense HOM05D000228 ORTHO05D013010 5.3e-16 88.6 98 44.9
CANSAT21G2272 Cannabis sativa HOM05D000228 ORTHO05D006129 6.9e-16 88.2 92 46.7
CiPaw.12G099100 Carya illinoinensis HOM05D000228 ORTHO05D013010 6.9e-16 88.2 101 40.6
Lalb_Chr05g0225101 Lupinus albus HOM05D000228 ORTHO05D013010 6.9e-16 88.2 98 49.0
Prupe.5G089300 Prunus persica HOM05D000228 ORTHO05D006129 6.9e-16 88.2 99 42.4
PGR031G2544 Punica granatum HOM05D000228 ORTHO05D006129 6.9e-16 88.2 94 45.7
CSS0022136 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D006129 1.2e-15 87.4 92 44.6
TPR.G6660 Trifolium pratense HOM05D000228 ORTHO05D006129 1.2e-15 87.4 99 44.4
Atru.chr9.1533 Acer truncatum HOM05D000228 ORTHO05D006129 2.0e-15 86.7 98 43.9
VMungo1215G3193 Vigna mungo HOM05D000228 ORTHO05D006129 2.0e-15 86.7 95 46.3
Glyma.11G026700 Glycine max HOM05D000228 ORTHO05D006129 2.6e-15 86.3 95 45.3
Sed0014462 Sechium edule HOM05D000228 ORTHO05D006129 2.6e-15 86.3 99 40.4
Phvul.002G153700 Phaseolus vulgaris HOM05D000228 ORTHO05D006129 4.5e-15 85.5 95 46.3
RcHm_v2.0_Chr7g0199481 Rosa chinensis HOM05D000228 ORTHO05D006129 4.5e-15 85.5 98 43.9
Lj2g0010994 Lotus japonicus HOM05D000228 ORTHO05D006129 7.7e-15 84.7 93 47.3
Manes.02G028200 Manihot esculenta HOM05D000228 ORTHO05D006129 7.7e-15 84.7 94 42.6
SHI01912 Sapria himalayana HOM05D000228 ORTHO05D006129 7.7e-15 84.7 91 45.1
Sc01g0008810 Simmondsia chinensis HOM05D001804 ORTHO05D006129 7.7e-15 84.7 101 42.6
Eucgr.D01929 Eucalyptus grandis HOM05D000228 ORTHO05D006129 1.0e-14 84.3 98 41.8
FAN04G1469 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.0e-14 84.3 100 42.0
Rhsim07G0095300 Rhododendron simsii HOM05D000228 ORTHO05D006129 1.3e-14 84.0 92 43.5
Cfa012094 Carpinus fangiana HOM05D000228 ORTHO05D006129 2.9e-14 82.8 102 36.3
Hma1.2p1_0138F.1_g062630 Hydrangea macrophylla HOM05D000228 ORTHO05D006129 2.9e-14 82.8 89 48.3
GSVIVG01019869001 Vitis vinifera HOM05D000228 ORTHO05D006129 2.9e-14 82.8 94 42.6
FvH4_5g01400 Fragaria vesca HOM05D000228 ORTHO05D006129 3.8e-14 82.4 98 41.8
FAN18G2520 Fragaria x ananassa HOM05D000228 ORTHO05D006129 3.8e-14 82.4 98 41.8
Thecc.03G270300 Theobroma cacao HOM05D000228 ORTHO05D006129 3.8e-14 82.4 98 41.8
FAN08G3600 Fragaria x ananassa HOM05D000228 ORTHO05D006129 5.0e-14 82.0 95 43.2
Potri.001G111300 Populus trichocarpa HOM05D000228 ORTHO05D006129 5.0e-14 82.0 92 43.5
QL05p069269 Quercus lobata HOM05D000228 ORTHO05D006129 5.0e-14 82.0 100 40.0
COL.COLO4_05280 Corchorus olitorius HOM05D000228 ORTHO05D006129 6.5e-14 81.6 95 42.1
AUR62010662 Chenopodium quinoa HOM05D000228 ORTHO05D006129 8.5e-14 81.3 98 40.8
AUR62017301 Chenopodium quinoa HOM05D000228 ORTHO05D006129 8.5e-14 81.3 98 40.8
Gohir.A08G178200 Gossypium hirsutum HOM05D000228 ORTHO05D006129 8.5e-14 81.3 98 41.8
Gohir.A11G021201 Gossypium hirsutum HOM05D000228 ORTHO05D013010 8.5e-14 81.3 102 42.2
Gohir.D08G196600 Gossypium hirsutum HOM05D000228 ORTHO05D006129 8.5e-14 81.3 98 41.8
Gorai.004G207300 Gossypium raimondii HOM05D000228 ORTHO05D006129 8.5e-14 81.3 98 41.8
Lsat_1_v5_gn_3_5900 Lactuca sativa HOM05D000228 ORTHO05D006129 8.5e-14 81.3 110 39.1
vmacro14006 Vaccinium macrocarpon HOM05D000228 ORTHO05D006129 8.5e-14 81.3 92 41.3
FAN13G2476 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.1e-13 80.9 92 43.5
arahy.Tifrunner.gnm1.ann1.6SF4HQ Arachis hypogaea HOM05D000228 ORTHO05D013010 1.4e-13 80.5 49 73.5
Haze_08958 Corylus avellana HOM05D000228 ORTHO05D006129 1.4e-13 80.5 100 37.0
Sabra01G0084800 Salix brachista HOM05D000228 ORTHO05D006129 1.4e-13 80.5 92 43.5
Dinv37697 Davidia involucrata HOM05D000228 ORTHO05D006129 1.9e-13 80.1 93 43.0
ECA246G3981 Erigeron canadensis HOM05D000228 ORTHO05D006129 3.2e-13 79.3 105 40.0
QL12p017019 Quercus lobata HOM05D000228 ORTHO05D006129 3.2e-13 79.3 95 42.1
TWI15G0190 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 3.2e-13 79.3 98 39.8
PSO782G2782 Papaver somniferum HOM05D000228 ORTHO05D006129 4.2e-13 79.0 95 34.7
Hund11530 Selenicereus undatus HOM05D000228 ORTHO05D006129 4.2e-13 79.0 98 39.8
Dinv39017 Davidia involucrata HOM05D000228 ORTHO05D006129 5.5e-13 78.6 92 43.5
MBI12_g02094_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D006129 5.5e-13 78.6 101 35.6
PSO478G3868 Papaver somniferum HOM05D000228 ORTHO05D006129 7.2e-13 78.2 95 34.7
Ah.12g057750 Amaranthus hybridus HOM05D000228 ORTHO05D006129 9.4e-13 77.8 98 37.8
TWI60G0610 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 9.4e-13 77.8 98 38.8
Thhalv10023214m.g Eutrema salsugineum HOM05D000228 ORTHO05D006129 1.6e-12 77.0 97 37.1
HanXRQChr06g0165071 Helianthus annuus HOM05D000228 ORTHO05D006129 1.6e-12 77.0 93 39.8
Lj2C197T6 Lonicera japonica HOM05D000228 ORTHO05D006129 2.7e-12 76.3 79 44.3
Lj8C239G8 Lonicera japonica HOM05D000228 ORTHO05D006129 2.7e-12 76.3 94 42.6
AT1G63020 Arabidopsis thaliana HOM05D000228 ORTHO05D006129 3.6e-12 75.9 91 44.0
TAR636G2974 Trochodendron aralioides HOM05D000228 ORTHO05D006129 3.6e-12 75.9 127 34.6
Cc08_g13910 Coffea canephora HOM05D000228 ORTHO05D006129 4.7e-12 75.5 79 46.8
Carub.0002s0198 Capsella rubella HOM05D000228 ORTHO05D006129 6.1e-12 75.1 89 43.8
THA.LOC104809424 Tarenaya hassleriana HOM05D000228 ORTHO05D006129 6.1e-12 75.1 89 39.3
Ciclev10018489m.g Citrus clementina HOM05D000228 ORTHO05D006129 1.0e-11 74.3 94 38.3
Aa31LG2G520 Aethionema arabicum HOM05D000228 ORTHO05D006129 1.4e-11 73.9 94 38.3
AL2G12580 Arabidopsis lyrata HOM05D000228 ORTHO05D006129 1.4e-11 73.9 91 41.8
MD04G1068800 Malus domestica HOM05D000228 ORTHO05D006129 1.4e-11 73.9 91 40.7
Aqoxy1G00844 Aquilegia oxysepala HOM05D000228 ORTHO05D006129 2.3e-11 73.2 99 36.4
CARHR048610 Cardamine hirsuta HOM05D000228 ORTHO05D013010 3.9e-11 72.4 94 38.3
Nitab4.5_0001714g0190 Nicotiana tabacum HOM05D000228 ORTHO05D006129 3.9e-11 72.4 92 38.0
Nitab4.5_0007891g0030 Nicotiana tabacum HOM05D000228 ORTHO05D006129 5.2e-11 72.0 79 40.5
Sp2g01560 Schrenkiella parvula HOM05D000228 ORTHO05D006129 6.7e-11 71.6 93 39.8
MSTRG.25571 Avicennia marina HOM05D000228 ORTHO05D006129 8.8e-11 71.2 91 45.1
HPP92_014991 Vanilla planifolia HOM05D000228 ORTHO05D013010 1.1e-10 70.9 95 34.7
BcaC06g31930 Brassica carinata HOM05D000228 ORTHO05D006129 1.5e-10 70.5 96 36.5
Nn6g34281 Nelumbo nucifera HOM05D000228 ORTHO05D006129 1.5e-10 70.5 99 34.3
BcaC02g10404 Brassica carinata HOM05D000228 ORTHO05D006129 2.0e-10 70.1 96 36.5
C04p29320 Brassica napus HOM05D000228 ORTHO05D006129 2.0e-10 70.1 96 36.5
BolC4t24462H Brassica oleracea HOM05D000228 ORTHO05D006129 2.0e-10 70.1 96 36.5
Migut.A00916 Erythranthe guttata HOM05D000228 ORTHO05D006129 2.0e-10 70.1 93 37.6
CAN.G981.44 Capsicum annuum HOM05D000228 ORTHO05D006129 3.3e-10 69.3 79 39.2
CAN.G981.46 Capsicum annuum HOM05D000228 ORTHO05D006129 3.3e-10 69.3 78 41.0
A03p68370 Brassica napus HOM05D000228 ORTHO05D006129 4.4e-10 68.9 96 35.4
BraA01t02634Z Brassica rapa HOM05D000228 ORTHO05D006129 4.4e-10 68.9 96 35.4
unitig_22.g5477 Utricularia gibba HOM05D000228 ORTHO05D006129 7.4e-10 68.2 101 33.7
C09p15860 Brassica napus HOM05D000228 ORTHO05D006129 9.7e-10 67.8 97 35.1
Os04g0572600 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 9.7e-10 67.8 99 31.3
A09p13380 Brassica napus HOM05D000228 ORTHO05D006129 1.3e-09 67.4 100 35.0
BraA09t36984Z Brassica rapa HOM05D000228 ORTHO05D006129 1.3e-09 67.4 100 35.0
BcaC04g22731 Brassica carinata HOM05D000228 ORTHO05D006129 1.7e-09 67.0 97 35.1
Os09g0555200 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 1.7e-09 67.0 99 31.3
Oeu062351.1 Olea europaea HOM05D000228 ORTHO05D006129 2.2e-09 66.6 88 39.8
BolC9t54499H Brassica oleracea HOM05D000228 ORTHO05D006129 2.8e-09 66.2 97 34.0
Zm00001eb035080 Zea mays HOM05D000228 ORTHO05D006129 2.8e-09 66.2 99 31.3
ATR0757G037 Amborella trichopoda HOM05D000228 ORTHO05D006129 1.1e-08 64.3 100 33.0
DCAR_006765 Daucus carota HOM05D000228 ORTHO05D006129 2.6e-07 59.7 100 33.0
SGA_v2.0_scaffold146G36222 Striga asiatica HOM05D000228 ORTHO05D006129 2.6e-07 59.7 88 36.4
EL10Ac5g12720 Beta vulgaris HOM05D000228 ORTHO05D006129 2.2e-06 56.6 42 57.1
DCAR_008426 Daucus carota HOM05D000228 ORTHO05D006129 5.0e-06 55.5 85 40.0


User provided reference genes

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