Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 3616.2 1916 100.0
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 3149.8 1916 88.2
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1874.0 1970 55.7
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1781.5 1959 53.9
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1770.7 1964 54.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1728.8 1974 53.1
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1723.4 1936 53.1
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1721.8 1947 52.2
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1717.2 1839 53.5
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1713.0 1957 52.1
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1709.9 1939 53.1
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1709.1 1837 53.1
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1705.3 1967 51.6
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1705.3 1874 52.8
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1704.9 1837 53.2
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1702.6 1944 52.6
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1696.8 1951 52.2
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1693.7 1939 52.2
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1690.2 1976 52.2
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1690.2 1849 52.5
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1689.1 1921 53.4
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1687.5 1843 53.2
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1686.8 1943 52.3
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1686.4 1938 52.8
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1685.6 1941 52.3
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1685.6 1841 53.2
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1684.8 1923 53.0
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1682.9 1951 52.4
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1682.9 1838 53.0
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1681.0 1938 52.7
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1679.5 1844 52.9
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1679.1 1959 52.3
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1679.1 1948 52.5
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1677.5 1807 53.5
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1676.4 1926 51.3
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1675.6 1817 53.4
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1674.4 1934 53.7
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1674.1 1822 52.7
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1669.1 1869 51.7
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1667.5 1967 51.6
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1666.7 1959 52.3
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1665.6 1934 52.5
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1661.7 1941 51.7
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1659.0 1799 53.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1658.7 1889 52.9
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1655.2 2042 50.4
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1655.2 1807 52.9
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1654.0 1920 52.9
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1645.6 1679 55.1
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1645.2 1943 51.3
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1644.4 1949 52.1
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1642.5 1840 51.8
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1640.2 1809 52.0
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1639.4 1833 51.8
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1638.2 1944 51.2
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1638.2 1855 51.7
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1637.1 1823 52.2
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1636.7 1842 51.6
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1636.3 1945 51.4
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1635.2 1966 51.0
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1634.4 1980 51.2
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1632.8 1961 51.9
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1632.8 1941 51.2
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1632.5 1839 51.2
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1630.2 1876 50.9
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1621.7 1942 51.4
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1620.5 1962 51.0
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1620.1 1937 51.4
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1619.0 1956 49.1
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1619.0 1969 50.1
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1619.0 1828 51.1
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1617.4 1811 51.7
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1608.6 1832 51.1
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1607.8 1835 51.8
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1607.0 1792 52.3
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1605.9 1802 52.2
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1605.9 1944 51.1
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1602.0 1836 51.8
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1588.2 1938 49.5
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1587.4 1919 50.5
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1580.1 1852 49.6
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1572.4 1911 51.0
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1570.1 1940 49.6
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1568.5 1890 51.7
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1565.8 1853 50.0
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1541.2 1782 52.9
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1534.2 1939 49.4
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1517.7 1830 50.2
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1499.2 1820 49.0
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1497.3 1855 48.5
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1454.1 1901 46.2
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1449.9 1869 46.4
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1447.6 1869 46.7
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1447.2 1872 46.6
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1444.9 1868 46.5
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1442.2 1870 46.4
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1440.6 1875 46.7
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1437.9 1889 46.3
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1435.6 1877 46.4
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1434.9 1871 46.8
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1431.0 1883 46.5
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1427.9 1881 46.4
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1420.6 1883 46.3
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1420.6 1883 46.3
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1407.9 1847 46.2
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1397.5 1874 46.1
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1389.4 1887 46.4
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1389.4 1887 46.4
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1353.6 1926 44.9
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1352.0 1844 46.3
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1342.0 1729 48.0
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1226.5 1238 56.3
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1213.4 1496 50.8
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1166.8 1856 41.5
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1154.4 1796 42.2
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1151.7 1237 54.4
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1135.2 1348 49.0
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1087.8 1223 53.8
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 1.8e-295 1020.4 1950 38.1
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 8.5e-285 984.9 634 80.1
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 1.4e-284 984.2 1488 44.0
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.6e-280 970.7 996 55.5
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 2.6e-262 910.2 1769 37.4
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.3e-248 864.8 1068 51.0
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 7.2e-244 849.0 930 51.5
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 2.0e-238 830.9 1313 44.1
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.7e-230 803.9 785 57.7
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.6e-227 793.5 1795 33.2
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.6e-227 793.5 864 52.9
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 1.2e-225 788.5 864 53.6
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 7.6e-209 732.6 1423 38.3
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.1e-207 726.9 843 53.4
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.2e-168 598.2 645 52.4
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.5e-151 541.6 607 53.5
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 8.0e-142 510.0 696 43.5
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.6e-129 469.2 609 46.0
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 5.9e-129 467.2 497 51.9
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.0e-120 437.6 455 53.6
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.6e-110 404.8 543 47.1
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.5e-103 382.9 542 45.2
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 4.1e-98 364.8 1210 27.0
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 8.6e-96 357.1 429 50.3
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.8e-70 271.6 645 31.9
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 3.2e-66 258.8 475 37.7
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.5e-63 250.0 462 34.6
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 5.3e-61 241.5 522 33.1
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.3e-55 221.9 447 35.3
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.6e-54 219.9 222 56.8
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 4.8e-54 218.4 446 33.4
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.2e-52 213.8 831 28.6
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.4e-50 206.8 267 55.1
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 3.3e-47 195.7 179 62.6
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 1.3e-38 167.2 210 45.2
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.4e-29 137.1 203 47.3
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 5.5e-26 125.2 186 46.8
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.1e-13 84.3 202 36.1
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 1.6e-12 80.5 100 52.0
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 2.8e-09 69.7 60 51.7
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.6e-09 69.3 52 55.8
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 9.8e-07 61.2 33 75.8


User provided reference genes

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