Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 0.0e+00 1153.7 572 100.0
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 0.0e+00 1130.5 572 97.9
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 0.0e+00 1107.4 554 97.7
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.8e-307 1058.5 566 91.5
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 6.4e-305 1050.0 568 91.0
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 8.3e-305 1049.7 556 91.4
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 1.1e-304 1049.3 564 91.1
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 1.1e-304 1049.3 572 90.6
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 1.1e-304 1049.3 555 92.1
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 1.9e-304 1048.5 563 90.6
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-304 1048.1 565 90.6
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 2.4e-304 1048.1 568 90.7
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 2.4e-304 1048.1 556 91.7
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 4.1e-304 1047.3 567 90.7
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.4e-304 1047.0 568 90.1
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 7.1e-304 1046.6 566 91.0
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 7.1e-304 1046.6 566 90.3
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 7.1e-304 1046.6 566 90.3
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 9.2e-304 1046.2 563 90.6
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 1.2e-303 1045.8 572 89.5
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 1.2e-303 1045.8 565 90.1
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.2e-303 1045.8 567 90.5
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 1.2e-303 1045.8 569 90.0
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.2e-303 1045.8 556 91.5
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.6e-303 1045.4 567 90.1
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 1.6e-303 1045.4 567 90.3
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 1.6e-303 1045.4 567 90.3
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 2.1e-303 1045.0 560 90.0
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 2.1e-303 1045.0 566 90.1
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 2.7e-303 1044.6 556 91.0
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 2.7e-303 1044.6 567 89.8
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 3.5e-303 1044.3 568 90.5
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.5e-303 1044.3 566 89.9
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 3.5e-303 1044.3 564 91.0
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 4.6e-303 1043.9 567 90.1
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 4.6e-303 1043.9 570 89.3
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 4.6e-303 1043.9 566 90.1
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 4.6e-303 1043.9 565 90.6
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 6.0e-303 1043.5 572 89.5
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 6.0e-303 1043.5 572 89.2
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.0e-302 1042.7 568 90.0
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.0e-302 1042.7 567 90.3
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 1.0e-302 1042.7 567 90.3
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 1.3e-302 1042.3 568 89.6
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.7e-302 1042.0 554 91.2
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 3.0e-302 1041.2 567 89.6
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 3.0e-302 1041.2 570 89.8
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 5.1e-302 1040.4 556 91.0
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 5.1e-302 1040.4 567 90.1
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 1.1e-301 1039.3 566 90.1
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 1.1e-301 1039.3 563 90.2
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.5e-301 1038.9 565 89.9
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 1.9e-301 1038.5 563 89.5
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 1.9e-301 1038.5 566 89.9
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 4.3e-301 1037.3 554 90.3
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 4.3e-301 1037.3 554 91.2
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 5.6e-301 1036.9 565 89.7
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 5.6e-301 1036.9 554 90.6
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 5.6e-301 1036.9 566 89.6
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 7.3e-301 1036.6 570 89.1
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 1.2e-300 1035.8 572 88.5
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.6e-300 1035.4 563 89.7
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.6e-300 1035.4 572 88.8
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 2.1e-300 1035.0 554 90.1
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.8e-300 1034.6 554 89.9
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 2.8e-300 1034.6 565 88.8
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 2.8e-300 1034.6 555 90.5
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 4.7e-300 1033.9 572 89.0
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 4.7e-300 1033.9 565 89.0
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 6.2e-300 1033.5 566 89.0
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 8.1e-300 1033.1 570 88.4
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 1.1e-299 1032.7 593 86.3
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.4e-299 1032.3 554 90.1
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 4.0e-299 1030.8 564 89.4
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 5.2e-299 1030.4 570 88.2
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 5.2e-299 1030.4 570 88.2
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 2.6e-298 1028.1 566 88.9
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.4e-298 1027.7 599 85.5
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 4.4e-298 1027.3 570 88.1
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 4.4e-298 1027.3 570 88.1
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 1.3e-297 1025.8 561 88.8
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 1.7e-297 1025.4 566 88.7
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 4.1e-296 1020.8 553 88.4
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 5.4e-296 1020.4 521 94.0
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 5.4e-296 1020.4 599 84.8
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 1.0e-294 1016.1 572 87.8
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 1.7e-294 1015.4 611 82.7
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 8.7e-294 1013.1 562 87.2
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.5e-293 1011.5 554 88.3
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.3e-293 1011.1 554 88.3
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 5.2e-291 1003.8 598 84.1
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 3.8e-289 997.7 540 88.5
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.6e-287 992.3 577 85.8
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 2.2e-281 971.8 521 89.6
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 9.3e-280 966.5 566 85.7
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.3e-278 962.6 489 94.1
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.9e-270 934.5 500 91.8
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.0e-262 908.3 456 94.5
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 3.9e-262 907.9 540 80.9
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 1.0e-254 883.2 570 78.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 3.6e-247 858.2 543 77.3
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 3.5e-234 815.1 408 95.3
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.7e-233 812.8 556 74.3
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.8e-228 794.7 574 73.2
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 3.8e-225 785.0 417 92.3
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.5e-224 783.1 528 76.1
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 9.4e-224 780.4 523 76.5
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.3e-222 775.8 523 76.1
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.8e-220 768.8 503 75.9
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.0e-218 762.7 556 70.9
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 1.3e-212 743.4 565 69.2
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 9.2e-211 737.3 572 69.1
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.3e-208 728.4 560 67.5
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.9e-203 713.0 397 88.9
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.7e-193 679.9 515 70.3
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.0e-185 654.1 331 93.1
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 6.6e-169 598.2 312 91.0
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 2.5e-152 543.1 503 60.0
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.5e-141 507.3 262 91.2
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 4.2e-139 499.2 558 52.7
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.0e-137 494.6 462 58.4
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.0e-129 468.0 517 53.2
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.4e-126 456.8 293 77.8
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 7.0e-126 455.3 308 77.3
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 4.2e-123 446.0 385 62.6
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 8.0e-122 441.8 373 61.7
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.0e-121 441.4 260 85.8
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 1.4e-118 431.0 573 47.3
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 8.5e-116 421.8 567 46.7
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 2.6e-112 410.2 350 61.4
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.2e-107 393.3 239 84.5
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 4.2e-107 392.9 196 93.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.8e-97 360.9 246 74.8
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.5e-96 355.5 214 80.8
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 7.0e-94 349.0 267 66.3
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.6e-90 337.8 183 85.2
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 6.1e-90 335.9 167 95.2
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-85 320.5 300 60.7
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 6.6e-84 315.8 154 95.5
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.9e-83 314.3 160 91.9
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 6.8e-81 305.8 158 90.5
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 7.5e-80 302.4 321 56.1
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 2.4e-62 244.2 168 76.8
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 4.6e-61 240.0 167 77.8
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.0e-60 238.8 149 81.2
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 6.6e-52 209.5 123 84.6
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 5.3e-49 199.9 140 75.7
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 4.2e-46 190.3 105 86.7
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 8.7e-44 182.6 276 44.9
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 5.3e-41 173.3 148 61.5
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-40 171.8 113 75.2
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 9.0e-33 146.0 98 76.5
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 7.4e-27 126.3 75 84.0
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 1.2e-24 119.0 73 82.2
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 4.5e-24 117.1 147 54.4
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 5.5e-22 110.2 55 96.4
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 2.5e-19 101.3 86 68.6
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-19 100.5 58 84.5
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 47 91.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.6e-16 91.3 52 80.8
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 2.6e-16 91.3 63 71.4
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-14 85.1 44 84.1
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 4.2e-14 84.0 59 69.5
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 9.4e-14 82.8 88 58.0
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 2.6e-11 74.7 49 69.4
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 2.5e-06 58.2 60 60.0
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 4.2e-06 57.4 52 63.5


User provided reference genes

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