Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb417920 Zea mays HOM05D000228 ORTHO05D022069 1.6e-45 185.7 88 100.0
Zm00001eb016000 Zea mays HOM05D000228 ORTHO05D005112 7.1e-22 107.1 58 89.7
THA.LOC104818848 Tarenaya hassleriana HOM05D000228 ORTHO05D005112 5.9e-16 87.4 59 69.5
Aa31sc1187G20 Aethionema arabicum HOM05D000228 ORTHO05D005112 7.7e-16 87.0 60 70.0
Aa31sc992G30 Aethionema arabicum HOM05D000228 ORTHO05D005112 7.7e-16 87.0 60 70.0
BcaB02g07586 Brassica carinata HOM05D000228 ORTHO05D005112 7.7e-16 87.0 59 69.5
A07p23580 Brassica napus HOM05D000228 ORTHO05D005112 7.7e-16 87.0 59 69.5
C06p24710 Brassica napus HOM05D000228 ORTHO05D005112 7.7e-16 87.0 59 69.5
BraA07t30016Z Brassica rapa HOM05D000228 ORTHO05D005112 7.7e-16 87.0 59 69.5
Lj7A597G62 Lonicera japonica HOM05D000228 ORTHO05D005112 1.0e-15 86.7 58 70.7
AT3G57660 Arabidopsis thaliana HOM05D000228 ORTHO05D005112 1.3e-15 86.3 59 67.8
CAN.G128.23 Capsicum annuum HOM05D000228 ORTHO05D005112 2.2e-15 85.5 58 70.7
Mapoly0053s0083 Marchantia polymorpha HOM05D000228 ORTHO05D005112 2.2e-15 85.5 57 66.7
Cpa.g.sc92.6 Carica papaya HOM05D000228 ORTHO05D005112 2.9e-15 85.1 59 66.1
BcaC08g44860 Brassica carinata HOM05D000228 ORTHO05D005112 3.8e-15 84.7 59 67.8
CANSAT80G1181 Cannabis sativa HOM05D000228 ORTHO05D005112 3.8e-15 84.7 58 70.7
Nitab4.5_0001347g0020 Nicotiana tabacum HOM05D000228 ORTHO05D005112 3.8e-15 84.7 58 70.7
AL5G39280 Arabidopsis lyrata HOM05D000228 ORTHO05D005112 5.0e-15 84.3 59 66.1
Carub.0005s2449 Capsella rubella HOM05D000228 ORTHO05D005112 5.0e-15 84.3 59 66.1
Dinv36249 Davidia involucrata HOM05D000228 ORTHO05D005112 5.0e-15 84.3 58 70.7
Thhalv10005738m.g Eutrema salsugineum HOM05D000228 ORTHO05D005112 5.0e-15 84.3 58 69.0
TWI75G0708 Tripterygium wilfordii HOM05D000228 ORTHO05D005112 5.0e-15 84.3 59 69.5
BcaC07g40146 Brassica carinata HOM05D000228 ORTHO05D005112 6.5e-15 84.0 59 66.1
Sp5g04970 Schrenkiella parvula HOM05D000228 ORTHO05D005112 6.5e-15 84.0 59 66.1
BcaC07g40356 Brassica carinata HOM05D000228 ORTHO05D005112 8.5e-15 83.6 59 66.1
A09p50510 Brassica napus HOM05D000228 ORTHO05D005112 8.5e-15 83.6 59 66.1
C08p33230 Brassica napus HOM05D000228 ORTHO05D005112 8.5e-15 83.6 59 66.1
BolC8t50924H Brassica oleracea HOM05D000228 ORTHO05D005112 8.5e-15 83.6 59 66.1
BraA09t40502Z Brassica rapa HOM05D000228 ORTHO05D005112 8.5e-15 83.6 59 66.1
Peaxi162Scf03258g00019 Petunia axillaris HOM05D000228 ORTHO05D005112 8.5e-15 83.6 58 69.0
CSS0039942 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D005112 1.1e-14 83.2 58 69.0
Lsat_1_v5_gn_9_27541 Lactuca sativa HOM05D000228 ORTHO05D005112 1.4e-14 82.8 58 67.2
Oeu033168.1 Olea europaea HOM05D000228 ORTHO05D005112 1.4e-14 82.8 57 64.9
Haze_19911 Corylus avellana HOM05D000228 ORTHO05D005112 1.9e-14 82.4 52 75.0
Cc06_g16580 Coffea canephora HOM05D000228 ORTHO05D005112 2.5e-14 82.0 58 69.0
MELO3C009661.2 Cucumis melo HOM05D000228 ORTHO05D005112 2.5e-14 82.0 53 73.6
DCAR_020471 Daucus carota HOM05D000228 ORTHO05D005112 2.5e-14 82.0 58 67.2
HanXRQChr10g0290381 Helianthus annuus HOM05D000228 ORTHO05D005112 2.5e-14 82.0 58 67.2
Sabra06G0039200 Salix brachista HOM05D000228 ORTHO05D005112 2.5e-14 82.0 58 67.2
AUR62043125 Chenopodium quinoa HOM05D000228 ORTHO05D005112 3.2e-14 81.6 58 69.0
CsaV3_3G039160 Cucumis sativus L. HOM05D000228 ORTHO05D005112 3.2e-14 81.6 60 66.7
Oeu004018.1 Olea europaea HOM05D000228 ORTHO05D005112 3.2e-14 81.6 57 64.9
Oeu004019.1 Olea europaea HOM05D000228 ORTHO05D005112 3.2e-14 81.6 57 64.9
Potri.006G055300 Populus trichocarpa HOM05D000228 ORTHO05D005112 3.2e-14 81.6 58 67.2
vmacro20114 Vaccinium macrocarpon HOM05D000228 ORTHO05D005112 3.2e-14 81.6 58 67.2
Duzib128G0079 Durio zibethinus HOM05D000228 ORTHO05D005112 4.2e-14 81.3 58 69.0
Solyc10g080350.3 Solanum lycopersicum HOM05D000228 ORTHO05D005112 4.2e-14 81.3 58 67.2
Sopen10g030910 Solanum pennellii HOM05D000228 ORTHO05D005112 4.2e-14 81.3 58 67.2
Thecc.05G162700 Theobroma cacao HOM05D000228 ORTHO05D005112 4.2e-14 81.3 58 69.0
Cfa016860 Carpinus fangiana HOM05D000228 ORTHO05D005112 5.5e-14 80.9 59 66.1
Eucgr.K01811 Eucalyptus grandis HOM05D000228 ORTHO05D005112 5.5e-14 80.9 59 66.1
MD12G1066600 Malus domestica HOM05D000228 ORTHO05D005112 5.5e-14 80.9 58 65.5
CiPaw.09G034800 Carya illinoinensis HOM05D000228 ORTHO05D005112 7.2e-14 80.5 59 66.1
ECA247G1984 Erigeron canadensis HOM05D000228 ORTHO05D005112 7.2e-14 80.5 58 67.2
Prupe.7G067700 Prunus persica HOM05D000228 ORTHO05D005112 7.2e-14 80.5 58 65.5
Hund24743 Selenicereus undatus HOM05D000228 ORTHO05D005112 7.2e-14 80.5 58 69.0
GSVIVG01033327001 Vitis vinifera HOM05D000228 ORTHO05D005112 7.2e-14 80.5 58 65.5
Gohir.A02G106900 Gossypium hirsutum HOM05D000228 ORTHO05D005112 9.4e-14 80.1 58 67.2
Gohir.D03G070500 Gossypium hirsutum HOM05D000228 ORTHO05D005112 9.4e-14 80.1 58 67.2
Gorai.003G089300 Gossypium raimondii HOM05D000228 ORTHO05D005112 9.4e-14 80.1 58 67.2
EL10Ac2g03322 Beta vulgaris HOM05D000228 ORTHO05D005112 1.2e-13 79.7 58 67.2
Nn7g37022 Nelumbo nucifera HOM05D000228 ORTHO05D005112 1.2e-13 79.7 58 67.2
Sed0022055 Sechium edule HOM05D000228 ORTHO05D005112 1.2e-13 79.7 58 65.5
Ciclev10004132m.g Citrus clementina HOM05D000228 ORTHO05D005112 1.6e-13 79.3 58 67.2
COL.COLO4_28678 Corchorus olitorius HOM05D000228 ORTHO05D005112 1.6e-13 79.3 58 65.5
PSO339G5840 Papaver somniferum HOM05D000228 ORTHO05D005112 1.6e-13 79.3 59 62.7
PSO384G0893 Papaver somniferum HOM05D000228 ORTHO05D005112 1.6e-13 79.3 59 62.7
Pp3c14_2730 Physcomitrium patens HOM05D000228 ORTHO05D005112 1.6e-13 79.3 68 58.8
Nitab4.5_0016623g0010 Nicotiana tabacum HOM05D000228 ORTHO05D005112 2.1e-13 79.0 50 74.0
PGR042G3811 Punica granatum HOM05D000228 ORTHO05D005112 2.1e-13 79.0 58 65.5
QL05p021274 Quercus lobata HOM05D000228 ORTHO05D005112 2.1e-13 79.0 59 64.4
AagrBONN_evm.TU.Sc2ySwM_117.4097 Anthoceros agrestis HOM05D000228 ORTHO05D005112 2.7e-13 78.6 58 65.5
Rhsim03G0012300 Rhododendron simsii HOM05D000228 ORTHO05D005112 2.7e-13 78.6 50 72.0
SalBow6G4505 Salvia bowleyana HOM05D000228 ORTHO05D005112 2.7e-13 78.6 57 64.9
SHI27541 Sapria himalayana HOM05D000228 ORTHO05D005112 2.7e-13 78.6 59 61.0
SGA_v2.0_scaffold105G30449 Striga asiatica HOM05D000228 ORTHO05D005112 2.7e-13 78.6 57 64.9
Ah.13g070900 Amaranthus hybridus HOM05D000228 ORTHO05D005112 3.6e-13 78.2 58 67.2
CARHR167900 Cardamine hirsuta HOM05D000228 ORTHO05D005112 3.6e-13 78.2 59 61.0
Manes.09G029200 Manihot esculenta HOM05D000228 ORTHO05D005112 4.6e-13 77.8 49 73.5
Lj5g0016256 Lotus japonicus HOM05D000228 ORTHO05D005112 7.9e-13 77.0 59 62.7
Sc20g0005060 Simmondsia chinensis HOM05D000228 ORTHO05D005112 7.9e-13 77.0 58 67.2
Actinidia09359 Actinidia chinensis HOM05D000228 ORTHO05D005112 1.0e-12 76.6 58 65.5
arahy.Tifrunner.gnm1.ann1.BY74GT Arachis hypogaea HOM05D000228 ORTHO05D005112 1.0e-12 76.6 58 65.5
CBR_g4028 Chara braunii HOM05D000228 ORTHO05D005112 1.0e-12 76.6 58 63.8
ClCG10G017230 Citrullus lanatus HOM05D000228 ORTHO05D005112 1.4e-12 76.3 51 70.6
MSTRG.931 Avicennia marina HOM05D000228 ORTHO05D005112 1.8e-12 75.9 57 64.9
Medtr4g086290 Medicago truncatula HOM05D000228 ORTHO05D005112 1.8e-12 75.9 58 63.8
RcHm_v2.0_Chr3g0481021 Rosa chinensis HOM05D000228 ORTHO05D005112 1.8e-12 75.9 56 64.3
VMungo0720G2008 Vigna mungo HOM05D000228 ORTHO05D005112 1.8e-12 75.9 58 63.8
arahy.Tifrunner.gnm1.ann1.L2VW3R Arachis hypogaea HOM05D000228 ORTHO05D005112 2.3e-12 75.5 58 63.8
AUR62032979 Chenopodium quinoa HOM05D000228 ORTHO05D005112 2.3e-12 75.5 58 65.5
arahy.Tifrunner.gnm1.ann1.7V0RSZ Arachis hypogaea HOM05D000228 ORTHO05D005112 3.0e-12 75.1 58 63.8
FvH4_5g35030 Fragaria vesca HOM05D000228 ORTHO05D005112 3.0e-12 75.1 56 66.1
Psat7g085520 Pisum sativum HOM05D000228 ORTHO05D005112 3.0e-12 75.1 49 71.4
TAR636G1992 Trochodendron aralioides HOM05D000228 ORTHO05D005112 3.0e-12 75.1 42 81.0
ATR0605G316 Amborella trichopoda HOM05D000228 ORTHO05D005112 3.9e-12 74.7 58 65.5
arahy.Tifrunner.gnm1.ann1.02EG99 Arachis hypogaea HOM05D000228 ORTHO05D005112 3.9e-12 74.7 58 63.8
CDE04G1016 Ceratophyllum demersum HOM05D000228 ORTHO05D005112 3.9e-12 74.7 49 69.4
TPR.G28490 Trifolium pratense HOM05D000228 ORTHO05D005112 3.9e-12 74.7 58 62.1
FvH4_6g23210 Fragaria vesca HOM05D000228 ORTHO05D005112 5.1e-12 74.3 50 70.0
FAN02G2218 Fragaria x ananassa HOM05D000228 ORTHO05D005112 5.1e-12 74.3 50 70.0
FAN05G0345 Fragaria x ananassa HOM05D000228 ORTHO05D005112 5.1e-12 74.3 50 70.0
FAN09G2168 Fragaria x ananassa HOM05D000228 ORTHO05D005112 5.1e-12 74.3 50 70.0
FAN14G5358 Fragaria x ananassa HOM05D000228 ORTHO05D005112 5.1e-12 74.3 50 70.0
Glyma.10G095200 Glycine max HOM05D000228 ORTHO05D005112 5.1e-12 74.3 58 63.8
AUR62020164 Chenopodium quinoa HOM05D000228 ORTHO05D005112 6.7e-12 73.9 58 63.8
Lalb_Chr16g0380371 Lupinus albus HOM05D000228 ORTHO05D005112 6.7e-12 73.9 49 71.4
HPP92_015356 Vanilla planifolia HOM05D000228 ORTHO05D005112 6.7e-12 73.9 58 63.8
FvH4_5g34330 Fragaria vesca HOM05D000228 ORTHO05D005112 8.8e-12 73.6 56 66.1
Phvul.007G255400 Phaseolus vulgaris HOM05D000228 ORTHO05D005112 8.8e-12 73.6 58 60.3
SGA_v2.0_scaffold522G52702 Striga asiatica HOM05D000228 ORTHO05D005112 8.8e-12 73.6 49 71.4
EL10Ac1g00646 Beta vulgaris HOM05D000228 ORTHO05D005112 1.1e-11 73.2 57 63.2
EL10Ac1g00656 Beta vulgaris HOM05D000228 ORTHO05D005112 1.1e-11 73.2 57 63.2
MD14G1066800 Malus domestica HOM05D000228 ORTHO05D022069 1.1e-11 73.2 50 68.0
Lalb_Chr09g0325001 Lupinus albus HOM05D000228 ORTHO05D005112 1.5e-11 72.8 49 69.4
Psat2g081880 Pisum sativum HOM05D000228 ORTHO05D022069 2.0e-11 72.4 58 60.3
Haze_26399 Corylus avellana HOM05D000228 ORTHO05D005112 2.5e-11 72.0 61 62.3
Migut.J01785 Erythranthe guttata HOM05D000228 ORTHO05D005112 2.5e-11 72.0 48 68.8
Cre12.g529600 Chlamydomonas reinhardtii HOM05D000228 ORTHO05D005112 4.3e-11 71.2 58 58.6
Ca_25862_v3 Cicer arietinum L. HOM05D000228 ORTHO05D005112 5.7e-11 70.9 49 69.4
Ca_27020_v3 Cicer arietinum L. HOM05D000228 ORTHO05D005112 5.7e-11 70.9 49 69.4
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 7.4e-11 70.5 57 59.6
BolC6t37614H Brassica oleracea HOM05D001030 ORTHO05D022069 1.3e-10 69.7 42 76.2
MCO12G205 Micromonas commoda HOM05D000228 ORTHO05D005112 2.2e-10 68.9 52 61.5
A07p23510 Brassica napus HOM05D000228 ORTHO05D022069 4.8e-10 67.8 50 60.0
Aqoxy1G00159 Aquilegia oxysepala HOM05D000228 ORTHO05D005112 8.2e-10 67.0 58 56.9
PRCOL_00005406 Prasinoderma coloniale HOM05D000228 ORTHO05D005112 8.2e-10 67.0 58 55.2
PSO832G1250 Papaver somniferum HOM05D000228 ORTHO05D022069 4.1e-09 64.7 41 68.3
Cfa024970 Carpinus fangiana HOM05D000228 ORTHO05D005112 1.5e-08 62.8 59 54.2
unitig_32.g11071 Utricularia gibba HOM05D000228 ORTHO05D005112 2.2e-07 58.9 38 73.7


User provided reference genes

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