Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 1.2e-272 942.6 497 100.0
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 4.8e-22 110.2 55 89.1
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 1.8e-21 108.2 54 88.9
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 1.8e-21 108.2 54 88.9
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 1.8e-21 108.2 55 87.3
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 4.0e-21 107.1 54 87.0
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 4.5e-20 103.6 52 90.4
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 4.5e-20 103.6 52 90.4
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 8.4e-19 99.4 61 73.8
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 8.4e-19 99.4 54 77.8
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 1.1e-18 99.0 54 77.8
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 2.4e-18 97.8 54 79.6
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 2.4e-18 97.8 54 75.9
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 3.2e-18 97.4 54 79.6
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 3.2e-18 97.4 54 79.6
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 4.2e-18 97.1 54 79.6
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 4.2e-18 97.1 54 79.6
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 4.2e-18 97.1 54 77.8
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 4.2e-18 97.1 54 77.8
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 4.2e-18 97.1 54 77.8
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 4.2e-18 97.1 58 74.1
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 4.2e-18 97.1 54 79.6
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 5.5e-18 96.7 54 79.6
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 5.5e-18 96.7 54 79.6
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 5.5e-18 96.7 54 79.6
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 7.1e-18 96.3 54 79.6
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 7.1e-18 96.3 54 79.6
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 7.1e-18 96.3 54 79.6
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 7.1e-18 96.3 54 79.6
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 7.1e-18 96.3 54 79.6
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 7.1e-18 96.3 54 79.6
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 9.3e-18 95.9 54 75.9
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 9.3e-18 95.9 54 77.8
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 9.3e-18 95.9 54 79.6
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 9.3e-18 95.9 54 77.8
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 9.3e-18 95.9 54 79.6
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 1.2e-17 95.5 54 79.6
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 1.2e-17 95.5 54 79.6
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 2.1e-17 94.7 54 77.8
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 2.7e-17 94.4 54 77.8
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 2.7e-17 94.4 54 77.8
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 2.7e-17 94.4 54 75.9
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 2.7e-17 94.4 54 77.8
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 2.7e-17 94.4 54 75.9
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 2.7e-17 94.4 54 77.8
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 2.7e-17 94.4 54 75.9
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 2.7e-17 94.4 54 75.9
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 75.9
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 75.9
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 3.5e-17 94.0 54 77.8
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 4.6e-17 93.6 54 77.8
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 4.6e-17 93.6 54 75.9
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 4.6e-17 93.6 54 75.9
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 4.6e-17 93.6 54 77.8
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 4.6e-17 93.6 54 75.9
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 4.6e-17 93.6 54 75.9
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 4.6e-17 93.6 54 75.9
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 4.6e-17 93.6 54 77.8
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 4.6e-17 93.6 54 75.9
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 4.6e-17 93.6 54 75.9
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 4.6e-17 93.6 54 77.8
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 6.0e-17 93.2 54 75.9
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 6.0e-17 93.2 54 74.1
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 6.0e-17 93.2 57 73.7
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 6.0e-17 93.2 54 75.9
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 6.0e-17 93.2 54 75.9
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 6.0e-17 93.2 54 75.9
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 6.0e-17 93.2 54 75.9
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 6.0e-17 93.2 54 75.9
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 6.0e-17 93.2 54 74.1
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 6.0e-17 93.2 54 75.9
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 74.1
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.0e-16 92.4 62 67.7
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 1.0e-16 92.4 54 75.9
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 1.3e-16 92.0 54 74.1
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 1.3e-16 92.0 56 67.9
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.3e-16 92.0 62 67.7
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 1.3e-16 92.0 54 74.1
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 1.8e-16 91.7 54 75.9
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 1.8e-16 91.7 54 75.9
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 1.8e-16 91.7 54 75.9
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 1.8e-16 91.7 54 72.2
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 1.8e-16 91.7 54 72.2
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 1.8e-16 91.7 54 72.2
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 1.8e-16 91.7 54 74.1
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 2.3e-16 91.3 54 72.2
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 2.3e-16 91.3 54 72.2
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 2.3e-16 91.3 54 72.2
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 2.3e-16 91.3 54 74.1
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 2.3e-16 91.3 54 74.1
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 2.3e-16 91.3 54 74.1
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 3.0e-16 90.9 54 72.2
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 3.0e-16 90.9 54 74.1
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 3.9e-16 90.5 54 70.4
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 3.9e-16 90.5 54 70.4
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 3.9e-16 90.5 54 74.1
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 3.9e-16 90.5 54 74.1
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 3.9e-16 90.5 54 74.1
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 3.9e-16 90.5 54 74.1
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 6.7e-16 89.7 54 70.4
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 6.7e-16 89.7 54 70.4
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 6.7e-16 89.7 60 65.0
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 6.7e-16 89.7 54 70.4
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 8.7e-16 89.4 54 72.2
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 8.7e-16 89.4 54 70.4
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 1.1e-15 89.0 57 66.7
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 1.1e-15 89.0 57 66.7
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.1e-15 89.0 54 70.4
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 2.5e-15 87.8 54 68.5
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 2.5e-15 87.8 54 68.5
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 2.5e-15 87.8 54 68.5
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 2.5e-15 87.8 54 68.5
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 2.5e-15 87.8 54 68.5
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 2.5e-15 87.8 54 68.5
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 2.5e-15 87.8 54 68.5
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 2.5e-15 87.8 54 68.5
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 2.5e-15 87.8 54 68.5
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 2.5e-15 87.8 60 66.7
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 3.3e-15 87.4 54 68.5
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 4.3e-15 87.0 54 72.2
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 9.6e-15 85.9 49 71.4
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 9.6e-15 85.9 48 77.1
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 2.1e-14 84.7 47 76.6
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 3.7e-14 84.0 57 66.7
Zm00001eb305510 Zea mays HOM05D001283 ORTHO05D001109 3.4e-12 77.4 43 90.7
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 5.8e-12 76.6 54 59.3
Zm00001eb220130 Zea mays HOM05D001283 ORTHO05D001109 4.2e-10 70.5 43 86.0
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 7.1e-10 69.7 49 61.2
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 1.6e-09 68.6 66 47.0
Zm00001eb354330 Zea mays HOM05D001283 ORTHO05D001109 3.9e-08 63.9 85 54.1
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 8.7e-08 62.8 53 47.2
Zm00001eb267400 Zea mays HOM05D001283 ORTHO05D001109 1.5e-07 62.0 33 81.8
Zm00001eb394060 Zea mays HOM05D001283 ORTHO05D001109 1.3e-06 58.9 172 40.7
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 2.8e-06 57.8 32 75.0
Sabra16G0064400 Salix brachista HOM05D001283 ORTHO05D001109 6.3e-06 56.6 132 34.1


User provided reference genes

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