Gene: Zm00001eb394060

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb394060
  • Transcript Identifier Zm00001eb394060_T001
  • Gene Type Coding gene
  • Location 9 : 132596508-132598419 : positive

Gene Family Information

  • ID HOM05D001283
  • #Genes/#Species 488/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb394060_T001
  • pid Zm00001eb394060_P001
  • uniprot A0A3L6DDU6
  • uniprot B4FET2
  • uniprot C0PKF7
  • uniprot A0A1D6P975
  • entrez 100193374
  • refseq XP_008658102.1
  • refseq NP_001131976.1
  • refseq NM_001138504.1
  • refseq XM_008659880.1
  • V4_identifier Zm00001d047401

Descriptions

  • Description Zm00001e038130
  • Description Arginine/serine-rich splicing factor SCL25A transcript I
  • Description Serine/arginine-rich SC35-like splicing factor SCL33
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT1G55310
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G55310

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
IBA
GOA Databasenuclear speck
GO:0005737
IBA
GOA Databasecytoplasm
GO:0035061
ISO
PLAZA Integrative Orthologyinterchromatin granule AT1G55310
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G55310
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G55310

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.6.2 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SCL28/30/33)