Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 1.2e-253 879.4 477 100.0
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 2.4e-180 636.0 546 71.4
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 2.7e-179 632.5 465 79.6
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 2.8e-160 569.3 462 73.6
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 2.1e-131 473.4 533 58.7
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 1.2e-83 314.7 512 41.6
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 2.6e-81 307.0 386 46.9
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 7.4e-81 305.4 332 51.8
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 1.7e-80 304.3 336 50.0
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 1.7e-80 304.3 332 51.8
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 2.2e-80 303.9 331 51.7
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 2.2e-80 303.9 345 52.5
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 5.3e-79 299.3 389 45.2
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 1.2e-78 298.1 481 41.2
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 1.2e-78 298.1 316 56.0
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.6e-78 297.0 392 45.7
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 4.5e-78 296.2 315 51.4
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 1.0e-77 295.0 332 49.4
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 1.3e-77 294.7 332 49.7
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 1.3e-77 294.7 362 47.0
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 5.0e-77 292.7 332 49.4
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 1.1e-76 291.6 332 48.8
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 1.4e-76 291.2 332 48.8
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 1.9e-76 290.8 328 49.1
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 2.5e-76 290.4 332 52.7
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 4.2e-76 289.7 316 51.3
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 9.4e-76 288.5 334 47.3
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 1.2e-75 288.1 305 51.1
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.1e-75 287.3 344 47.1
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 3.6e-75 286.6 336 49.4
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 3.6e-75 286.6 333 47.7
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 4.7e-75 286.2 333 52.3
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 6.1e-75 285.8 333 50.5
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 1.0e-74 285.0 333 47.7
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 1.4e-74 284.6 325 52.9
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.0e-74 283.5 314 49.4
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 3.9e-74 283.1 305 51.8
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 3.9e-74 283.1 333 47.4
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 8.8e-74 282.0 314 50.6
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 8.8e-74 282.0 305 51.8
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.8e-72 276.9 332 47.0
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.8e-72 276.9 332 47.0
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 6.3e-72 275.8 435 40.0
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 6.3e-72 275.8 448 41.3
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 8.2e-72 275.4 541 36.2
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 1.4e-71 274.6 371 45.6
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.8e-71 274.2 515 37.5
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 2.4e-71 273.9 332 47.3
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 3.1e-71 273.5 327 47.4
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 3.1e-71 273.5 430 40.7
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 5.3e-71 272.7 335 48.1
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.2e-70 271.6 332 47.6
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 1.6e-70 271.2 332 47.6
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.0e-70 270.8 547 36.4
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 4.5e-70 269.6 450 40.9
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 7.7e-70 268.9 332 49.1
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 2.2e-69 267.3 313 47.9
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 2.2e-69 267.3 327 47.1
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 5.0e-69 266.2 314 49.7
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 5.0e-69 266.2 317 48.6
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 8.5e-69 265.4 332 46.4
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 8.5e-69 265.4 469 38.8
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.1e-68 265.0 332 46.4
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 1.5e-68 264.6 332 46.4
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.5e-68 264.6 332 46.4
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.9e-68 264.2 308 51.9
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 3.2e-68 263.5 327 46.5
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 5.5e-68 262.7 603 34.5
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.6e-67 261.2 315 49.5
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 2.7e-67 260.4 332 45.8
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.7e-67 260.4 332 45.5
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 8.0e-67 258.8 332 45.8
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 2.0e-65 254.2 471 37.4
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 2.0e-65 254.2 332 45.5
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 7.5e-65 252.3 334 44.9
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 7.5e-65 252.3 541 35.7
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 2.2e-64 250.8 543 35.0
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 3.7e-64 250.0 474 37.1
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 4.8e-64 249.6 543 35.2
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 8.2e-64 248.8 287 49.8
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 1.8e-63 247.7 530 36.6
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 5.3e-63 246.1 334 44.3
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 1.2e-62 245.0 415 41.4
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 2.0e-62 244.2 310 49.4
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 2.0e-62 244.2 436 37.8
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 3.5e-62 243.4 341 43.4
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 5.9e-62 242.7 319 44.8
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 1.0e-61 241.9 333 44.4
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 3.8e-61 240.0 337 45.1
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 3.8e-61 240.0 331 45.0
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.5e-60 238.0 332 46.4
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 1.2e-59 235.0 484 36.6
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.4e-58 231.5 291 48.5
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 6.8e-58 229.2 312 46.8
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 6.8e-58 229.2 312 46.8
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 1.5e-57 228.0 314 44.3
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 1.5e-57 228.0 314 44.3
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 2.2e-56 224.2 503 34.8
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 6.3e-56 222.6 332 41.6
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 9.1e-55 218.8 313 45.0
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 2.7e-54 217.2 517 34.4
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 7.7e-54 215.7 230 53.9
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 1.0e-53 215.3 349 42.1
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 1.3e-53 214.9 314 41.4
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.3e-53 214.2 337 43.0
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 2.5e-52 210.7 380 37.4
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.2e-51 208.4 331 39.9
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.2e-51 208.4 306 39.5
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 6.1e-51 206.1 247 50.2
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 1.4e-50 204.9 224 51.3
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.8e-50 204.5 256 48.8
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 4.5e-46 189.9 313 38.0
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 3.8e-45 186.8 313 38.3
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 1.2e-43 181.8 494 31.4
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.6e-43 180.3 249 45.0
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 2.6e-41 174.1 422 32.0
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 2.2e-40 171.0 305 39.0
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 8.3e-40 169.1 494 31.0
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 3.2e-39 167.2 320 38.4
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 5.4e-39 166.4 235 43.0
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 5.0e-37 159.8 216 44.4
Zm00001eb127560 Zea mays HOM05D004199 ORTHO05D005905 2.5e-28 131.0 98 70.4
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 5.6e-28 129.8 343 29.7
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 4.7e-27 126.7 310 33.9
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 9.5e-20 102.4 101 52.5
Zm00001eb381800 Zea mays HOM05D004199 ORTHO05D005905 1.2e-19 102.1 56 96.4
Zm00001eb177720 Zea mays HOM05D004199 ORTHO05D005905 2.8e-19 100.9 56 94.6
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.7e-19 100.1 151 43.7
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.4e-18 98.6 151 43.7
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 2.8e-11 74.3 71 50.7
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 8.1e-11 72.8 90 41.1
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 9.0e-10 69.3 118 40.7
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 9.0e-10 69.3 236 28.4
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.2e-09 68.9 77 48.1
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 8.4e-08 62.8 275 25.8
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 9.3e-07 59.3 34 67.6
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 6.0e-06 56.6 32 75.0
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 6.0e-06 56.6 32 75.0
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 6.0e-06 56.6 32 75.0
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 6.0e-06 56.6 32 75.0


User provided reference genes

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