Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb310080 Zea mays HOM05D003132 ORTHO05D003736 5.2e-94 347.8 190 100.0
Zm00001eb086740 Zea mays HOM05D003132 ORTHO05D003736 7.3e-48 194.5 141 74.5
Zm00001eb064020 Zea mays HOM05D003132 ORTHO05D003736 1.3e-44 183.7 99 87.9
Zm00001eb090720 Zea mays HOM05D003132 ORTHO05D003736 2.8e-39 166.0 91 86.8
RcHm_v2.0_Chr6g0249521 Rosa chinensis HOM05D003132 ORTHO05D003736 4.8e-31 138.7 103 61.2
GSVIVG01037118001 Vitis vinifera HOM05D003132 ORTHO05D003736 4.8e-31 138.7 103 62.1
Actinidia01536 Actinidia chinensis HOM05D003132 ORTHO05D003736 6.3e-31 138.3 104 63.5
Cfa021494 Carpinus fangiana HOM05D003132 ORTHO05D003736 6.3e-31 138.3 103 63.1
Haze_14017 Corylus avellana HOM05D003132 ORTHO05D003736 8.2e-31 137.9 103 63.1
CiPaw.03G011700 Carya illinoinensis HOM05D003132 ORTHO05D003736 1.1e-30 137.5 103 60.2
Medtr3g009180 Medicago truncatula HOM05D003132 ORTHO05D003736 1.4e-30 137.1 102 62.7
Prupe.8G002200 Prunus persica HOM05D003132 ORTHO05D003736 1.4e-30 137.1 103 62.1
Rhsim12G0001000 Rhododendron simsii HOM05D003132 ORTHO05D003736 1.8e-30 136.7 106 59.4
QL09p001110 Quercus lobata HOM05D003132 ORTHO05D003736 2.4e-30 136.3 103 62.1
MD10G1001000 Malus domestica HOM05D003132 ORTHO05D003736 3.1e-30 136.0 103 62.1
MBI03_g39997_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 5.3e-30 135.2 120 53.3
Eucgr.F04096 Eucalyptus grandis HOM05D003132 ORTHO05D003736 6.9e-30 134.8 103 61.2
Thecc.08G166600 Theobroma cacao HOM05D003132 ORTHO05D003736 6.9e-30 134.8 103 61.2
TPR.G16695 Trifolium pratense HOM05D003132 ORTHO05D003736 1.2e-29 134.0 102 60.8
Lj3g0025144 Lotus japonicus HOM05D003132 ORTHO05D003736 2.6e-29 132.9 102 60.8
FvH4_2g00230 Fragaria vesca HOM05D003132 ORTHO05D003736 4.5e-29 132.1 103 57.3
FAN19G2774 Fragaria x ananassa HOM05D003132 ORTHO05D003736 4.5e-29 132.1 103 56.3
FAN24G0668 Fragaria x ananassa HOM05D003132 ORTHO05D003736 4.5e-29 132.1 103 57.3
Ciclev10020271m.g Citrus clementina HOM05D003132 ORTHO05D003736 5.9e-29 131.7 103 59.2
Duzib177G0974 Durio zibethinus HOM05D003132 ORTHO05D003736 7.6e-29 131.3 103 59.2
Gohir.D08G251300 Gossypium hirsutum HOM05D003132 ORTHO05D003736 1.0e-28 131.0 124 53.2
Gorai.004G268000 Gossypium raimondii HOM05D003132 ORTHO05D003736 1.0e-28 131.0 124 53.2
TAR628G0652 Trochodendron aralioides HOM05D003132 ORTHO05D003736 1.3e-28 130.6 99 60.6
COL.COLO4_25069 Corchorus olitorius HOM05D003132 ORTHO05D003736 1.7e-28 130.2 118 54.2
arahy.Tifrunner.gnm1.ann1.M3HMN7 Arachis hypogaea HOM05D003132 ORTHO05D003736 2.2e-28 129.8 102 60.8
Atru.chr13.2600 Acer truncatum HOM05D003132 ORTHO05D003736 3.8e-28 129.0 103 60.2
Nn5g27185 Nelumbo nucifera HOM05D003132 ORTHO05D003736 6.5e-28 128.3 99 63.6
Potri.019G066200 Populus trichocarpa HOM05D003132 ORTHO05D003736 8.4e-28 127.9 106 56.6
Phvul.005G006600 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 1.1e-27 127.5 101 57.4
Sabra19G0078500 Salix brachista HOM05D003132 ORTHO05D003736 1.1e-27 127.5 106 56.6
arahy.Tifrunner.gnm1.ann1.F59MVU Arachis hypogaea HOM05D003132 ORTHO05D003736 1.4e-27 127.1 102 58.8
Manes.18G119900 Manihot esculenta HOM05D003132 ORTHO05D003736 1.4e-27 127.1 102 57.8
ATR1089G130 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.9e-27 126.7 99 58.6
Hma1.2p1_0378F.1_g139670 Hydrangea macrophylla HOM05D003132 ORTHO05D003736 1.9e-27 126.7 103 57.3
Cpa.g.sc249.17 Carica papaya HOM05D003132 ORTHO05D003736 5.5e-27 125.2 99 59.6
Glyma.04G116900 Glycine max HOM05D003132 ORTHO05D003736 5.5e-27 125.2 101 57.4
Gohir.A08G230900 Gossypium hirsutum HOM05D003132 ORTHO05D003736 7.2e-27 124.8 106 55.7
PGR102G0292 Punica granatum HOM05D003132 ORTHO05D003736 9.3e-27 124.4 102 53.9
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.3e-25 119.8 101 57.4
Psat5g230840 Pisum sativum HOM05D003132 ORTHO05D003736 8.7e-25 117.9 88 61.4
Lj9C693G4 Lonicera japonica HOM05D003132 ORTHO05D003736 1.9e-24 116.7 87 63.2
SMO356G0397 Selaginella moellendorffii HOM05D003132 ORTHO05D003736 1.9e-24 116.7 107 46.7
Ciclev10001011m.g Citrus clementina HOM05D003132 ORTHO05D003736 1.3e-23 114.0 106 50.9
unitig_21.g20190 Utricularia gibba HOM05D003132 ORTHO05D003736 1.6e-23 113.6 103 51.5
Cpa.g.sc828.2 Carica papaya HOM05D003132 ORTHO05D003736 6.3e-23 111.7 106 50.0
Sc01g0001580 Simmondsia chinensis HOM05D003132 ORTHO05D003736 8.2e-23 111.3 106 49.1
Mapoly0003s0258 Marchantia polymorpha HOM05D003132 ORTHO05D003736 1.1e-22 110.9 101 51.5
A10p27920 Brassica napus HOM05D003132 ORTHO05D003736 1.4e-22 110.5 106 46.2
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 1.4e-22 110.5 106 46.2
Lsat_1_v5_gn_9_67980 Lactuca sativa HOM05D003132 ORTHO05D003736 1.4e-22 110.5 103 47.6
arahy.Tifrunner.gnm1.ann1.KS02B5 Arachis hypogaea HOM05D003132 ORTHO05D003736 1.8e-22 110.2 106 50.0
arahy.Tifrunner.gnm1.ann1.M9VU1N Arachis hypogaea HOM05D003132 ORTHO05D003736 1.8e-22 110.2 106 50.0
AT5G09320 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 2.4e-22 109.8 106 48.1
C09p68030 Brassica napus HOM05D003132 ORTHO05D003736 2.4e-22 109.8 107 44.9
Sp6g33990 Schrenkiella parvula HOM05D003132 ORTHO05D003736 2.4e-22 109.8 106 46.2
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 3.1e-22 109.4 106 46.2
ECA238G0880 Erigeron canadensis HOM05D003132 ORTHO05D003736 3.1e-22 109.4 102 48.0
C05p45020 Brassica napus HOM05D003132 ORTHO05D003736 4.1e-22 109.0 106 47.2
CARHR204070 Cardamine hirsuta HOM05D003132 ORTHO05D003736 4.1e-22 109.0 107 48.6
Gohir.A06G040500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 4.1e-22 109.0 106 49.1
Gohir.D06G041500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 4.1e-22 109.0 106 49.1
BcaB08g37215 Brassica carinata HOM05D003132 ORTHO05D003736 5.3e-22 108.6 107 43.9
AagrBONN_evm.TU.Sc2ySwM_368.655 Anthoceros agrestis HOM05D003132 ORTHO05D003736 6.9e-22 108.2 102 46.1
CARHR095280 Cardamine hirsuta HOM05D003132 ORTHO05D003736 6.9e-22 108.2 106 45.3
Thhalv10020497m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 6.9e-22 108.2 106 46.2
Glyma.06G108200 Glycine max HOM05D003132 ORTHO05D003736 6.9e-22 108.2 106 48.1
HPP92_002181 Vanilla planifolia HOM05D003132 ORTHO05D003736 6.9e-22 108.2 106 49.1
BcaC05g28420 Brassica carinata HOM05D003132 ORTHO05D003736 9.0e-22 107.8 106 46.2
A05p29830 Brassica napus HOM05D003132 ORTHO05D003736 9.0e-22 107.8 106 46.2
BolC5t33226H Brassica oleracea HOM05D003132 ORTHO05D003736 9.0e-22 107.8 106 46.2
BraA05t21832Z Brassica rapa HOM05D003132 ORTHO05D003736 9.0e-22 107.8 106 46.2
Gorai.010G046700 Gossypium raimondii HOM05D003132 ORTHO05D003736 9.0e-22 107.8 106 48.1
Lsat_1_v5_gn_2_115101 Lactuca sativa HOM05D003132 ORTHO05D003736 9.0e-22 107.8 102 46.1
Lj1g0008302 Lotus japonicus HOM05D003132 ORTHO05D003736 9.0e-22 107.8 106 48.1
TAR628G0266 Trochodendron aralioides HOM05D003132 ORTHO05D003736 9.0e-22 107.8 106 48.1
BcaB06g26045 Brassica carinata HOM05D003132 ORTHO05D003736 1.2e-21 107.5 106 46.2
HanXRQChr14g0440811 Helianthus annuus HOM05D003132 ORTHO05D003736 1.2e-21 107.5 102 47.1
VMungo1080G0294 Vigna mungo HOM05D003132 ORTHO05D003736 1.2e-21 107.5 87 57.5
Atru.chr13.1311 Acer truncatum HOM05D003132 ORTHO05D003736 1.5e-21 107.1 106 47.2
Atru.chr13.1355 Acer truncatum HOM05D003132 ORTHO05D003736 1.5e-21 107.1 106 47.2
Nitab4.5_0004014g0020 Nicotiana tabacum HOM05D003132 ORTHO05D003736 1.5e-21 107.1 103 50.5
Hund20801 Selenicereus undatus HOM05D003132 ORTHO05D003736 1.5e-21 107.1 106 47.2
Duzib041G0476 Durio zibethinus HOM05D003132 ORTHO05D003736 2.0e-21 106.7 106 48.1
PGSC0003DMG400027521 Solanum tuberosum HOM05D003132 ORTHO05D003736 2.0e-21 106.7 103 49.5
Thecc.08G116200 Theobroma cacao HOM05D003132 ORTHO05D003736 2.0e-21 106.7 106 48.1
Ah.05g172730 Amaranthus hybridus HOM05D003132 ORTHO05D003736 3.4e-21 105.9 106 46.2
Nitab4.5_0002247g0160 Nicotiana tabacum HOM05D003132 ORTHO05D003736 3.4e-21 105.9 103 49.5
VMungo1309G0264 Vigna mungo HOM05D003132 ORTHO05D003736 3.4e-21 105.9 106 48.1
GSVIVG01008947001 Vitis vinifera HOM05D003132 ORTHO05D003736 3.4e-21 105.9 106 47.2
Carub.0003s1964 Capsella rubella HOM05D003132 ORTHO05D003736 4.5e-21 105.5 106 45.3
CAN.G134.60 Capsicum annuum HOM05D003132 ORTHO05D003736 4.5e-21 105.5 103 49.5
COL.COLO4_21818 Corchorus olitorius HOM05D003132 ORTHO05D003736 4.5e-21 105.5 96 51.0
Phvul.009G026000 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 4.5e-21 105.5 106 48.1
Solyc01g096990.4 Solanum lycopersicum HOM05D003132 ORTHO05D003736 4.5e-21 105.5 103 49.5
AL3G33220 Arabidopsis lyrata HOM05D003132 ORTHO05D003736 5.9e-21 105.1 106 44.3
AT3G19770 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 5.9e-21 105.1 106 44.3
CiPaw.06G024400 Carya illinoinensis HOM05D003132 ORTHO05D003736 5.9e-21 105.1 106 46.2
Eucgr.F03739 Eucalyptus grandis HOM05D003132 ORTHO05D003736 5.9e-21 105.1 106 47.2
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 5.9e-21 105.1 106 44.3
Medtr3g073360 Medicago truncatula HOM05D003132 ORTHO05D003736 5.9e-21 105.1 106 47.2
SGA_v2.0_scaffold28G12034 Striga asiatica HOM05D003132 ORTHO05D003736 5.9e-21 105.1 103 49.5
AUR62004688 Chenopodium quinoa HOM05D003132 ORTHO05D003736 7.7e-21 104.8 109 45.0
Lj7C306G6 Lonicera japonica HOM05D000316 ORTHO05D000374 7.7e-21 104.8 106 47.2
Peaxi162Scf00647g00129 Petunia axillaris HOM05D003132 ORTHO05D003736 7.7e-21 104.8 103 49.5
SalBow7G2329 Salvia bowleyana HOM05D003132 ORTHO05D003736 7.7e-21 104.8 103 47.6
SalBow7G4391 Salvia bowleyana HOM05D003132 ORTHO05D003736 7.7e-21 104.8 103 47.6
EL10Ac1g00043 Beta vulgaris HOM05D003132 ORTHO05D003736 1.0e-20 104.4 106 46.2
HanXRQChr15g0496671 Helianthus annuus HOM05D003132 ORTHO05D003736 1.0e-20 104.4 101 47.5
TWI56G0630 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 1.0e-20 104.4 106 46.2
Cfa015956 Carpinus fangiana HOM05D003132 ORTHO05D003736 1.3e-20 104.0 106 46.2
Ca_25763_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 1.3e-20 104.0 106 46.2
PSO170G1030 Papaver somniferum HOM05D003132 ORTHO05D003736 1.3e-20 104.0 106 48.1
CSS0019182 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 1.7e-20 103.6 106 45.3
Potri.005G171500 Populus trichocarpa HOM05D003132 ORTHO05D003736 1.7e-20 103.6 102 47.1
AUR62023605 Chenopodium quinoa HOM05D003132 ORTHO05D003736 2.2e-20 103.2 109 45.0
Cc00_g24650 Coffea canephora HOM05D003132 ORTHO05D003736 2.2e-20 103.2 103 47.6
MBI03_g11133_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 2.2e-20 103.2 106 46.2
Nn1g08540 Nelumbo nucifera HOM05D003132 ORTHO05D003736 2.2e-20 103.2 109 45.0
Migut.C01198 Erythranthe guttata HOM05D003132 ORTHO05D003736 2.9e-20 102.8 103 46.6
Glyma.04G254000 Glycine max HOM05D003132 ORTHO05D003736 2.9e-20 102.8 106 46.2
Psat5g133920 Pisum sativum HOM05D003132 ORTHO05D003736 2.9e-20 102.8 106 45.3
Sabra05G0129000 Salix brachista HOM05D003132 ORTHO05D003736 2.9e-20 102.8 102 47.1
TPR.G32950 Trifolium pratense HOM05D003132 ORTHO05D003736 2.9e-20 102.8 106 45.3
THA.LOC104806806 Tarenaya hassleriana HOM05D003132 ORTHO05D003736 3.8e-20 102.4 106 45.3
ATR0171G023 Amborella trichopoda HOM05D003132 ORTHO05D003736 5.0e-20 102.1 106 46.2
PSO017G5000 Papaver somniferum HOM05D003132 ORTHO05D003736 5.0e-20 102.1 106 47.2
MELO3C008519.2 Cucumis melo HOM05D003132 ORTHO05D003736 6.5e-20 101.7 101 45.5
Zm00001eb386380 Zea mays HOM05D003132 ORTHO05D003736 6.5e-20 101.7 51 94.1
ClCG06G009880 Citrullus lanatus HOM05D003132 ORTHO05D003736 8.5e-20 101.3 101 45.5
Dinv27388 Davidia involucrata HOM05D003132 ORTHO05D003736 8.5e-20 101.3 106 45.3
Lalb_Chr11g0065661 Lupinus albus HOM05D003132 ORTHO05D003736 8.5e-20 101.3 106 44.3
Aqoxy5G02472 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 1.1e-19 100.9 106 46.2
FvH4_5g38820 Fragaria vesca HOM05D003132 ORTHO05D003736 1.1e-19 100.9 106 45.3
FAN04G1930 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.1e-19 100.9 106 45.3
FAN08G0026 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.1e-19 100.9 106 45.3
FAN18G1429 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.1e-19 100.9 106 45.3
Dinv26724 Davidia involucrata HOM05D003132 ORTHO05D003736 1.4e-19 100.5 106 45.3
MD00G1104300 Malus domestica HOM05D003132 ORTHO05D003736 1.4e-19 100.5 106 45.3
MD15G1358700 Malus domestica HOM05D003132 ORTHO05D003736 1.4e-19 100.5 106 45.3
Actinidia29433 Actinidia chinensis HOM05D003132 ORTHO05D003736 1.9e-19 100.1 106 44.3
CDE06G0428 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 1.9e-19 100.1 106 45.3
DCAR_020428 Daucus carota HOM05D003132 ORTHO05D003736 1.9e-19 100.1 106 44.3
RcHm_v2.0_Chr7g0240821 Rosa chinensis HOM05D003132 ORTHO05D003736 2.5e-19 99.8 109 45.0
Oeu039582.2 Olea europaea HOM05D003132 ORTHO05D003736 4.2e-19 99.0 105 44.8
FAN13G2880 Fragaria x ananassa HOM05D003132 ORTHO05D003736 5.5e-19 98.6 106 44.3
Sed0019762 Sechium edule HOM05D003132 ORTHO05D003736 9.4e-19 97.8 98 43.9
FvH4_3g37600 Fragaria vesca HOM05D003132 ORTHO05D003736 1.6e-18 97.1 128 46.1
ECA246G0273 Erigeron canadensis HOM05D003132 ORTHO05D003736 2.1e-18 96.7 101 43.6
PGR044G0368 Punica granatum HOM05D003132 ORTHO05D003736 2.1e-18 96.7 106 41.5
CBR_g241 Chara braunii HOM05D003132 ORTHO05D003736 2.7e-18 96.3 95 45.3
PRCOL_00006551 Prasinoderma coloniale HOM05D003132 ORTHO05D003736 2.7e-18 96.3 108 42.6
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 3.6e-18 95.9 106 43.4
Rhsim11G0064900 Rhododendron simsii HOM05D003132 ORTHO05D003736 3.6e-18 95.9 95 47.4
vmacro00793 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 4.6e-18 95.5 95 47.4
Pp3c23_18370 Physcomitrium patens HOM05D003132 ORTHO05D003736 7.9e-18 94.7 101 47.5
TAR624G0618 Trochodendron aralioides HOM05D003132 ORTHO05D003736 1.0e-17 94.4 102 46.1
CsaV3_2G011340 Cucumis sativus L. HOM05D003132 ORTHO05D003736 2.3e-17 93.2 87 48.3
vmacro00917 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 2.3e-17 93.2 64 70.3
SGA_v2.0_scaffold118G32441 Striga asiatica HOM05D003132 ORTHO05D003736 3.0e-17 92.8 99 43.4
CDE06G1857 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 3.9e-17 92.4 92 47.8
Dinv22067 Davidia involucrata HOM05D003132 ORTHO05D003736 1.5e-16 90.5 66 63.6
Haze_00527 Corylus avellana HOM05D003132 ORTHO05D003736 2.8e-15 86.3 95 46.3
Sopen01g040690 Solanum pennellii HOM05D003132 ORTHO05D003736 2.8e-15 86.3 141 36.2
Oeu001990.2 Olea europaea HOM05D003132 ORTHO05D003736 6.3e-15 85.1 130 34.6
QL12p035360 Quercus lobata HOM05D003132 ORTHO05D003736 3.4e-13 79.3 148 31.8
Cre12.g547450 Chlamydomonas reinhardtii HOM05D003132 ORTHO05D003736 7.7e-13 78.2 81 44.4
Sp3g17790 Schrenkiella parvula HOM05D003132 ORTHO05D003736 2.2e-12 76.6 68 51.5
CiPaw.05G229400 Carya illinoinensis HOM05D003132 ORTHO05D003736 2.1e-10 70.1 68 50.0
ATR0495G010 Amborella trichopoda HOM05D003132 ORTHO05D003736 6.1e-10 68.6 70 45.7
BraA05t21819Z Brassica rapa HOM05D003132 ORTHO05D003736 1.8e-09 67.0 58 51.7
SEGI_27881 Sequoiadendron giganteum HOM05D003132 ORTHO05D003736 5.1e-09 65.5 58 51.7
BolC9t59562H Brassica oleracea HOM05D003132 ORTHO05D003736 3.3e-08 62.8 62 45.2
Os03g0842700 Oryza sativa ssp. japonica HOM05D003132 ORTHO05D003736 1.3e-07 60.8 36 72.2
Manes.02G158500 Manihot esculenta HOM05D003132 ORTHO05D003736 6.3e-07 58.5 58 44.8
Prupe.1G506400 Prunus persica HOM05D003132 ORTHO05D003736 3.1e-06 56.2 62 41.9


User provided reference genes

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