Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 3.7e-66 254.6 117 100.0
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 3.1e-41 171.8 77 100.0
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 9.1e-41 170.2 76 100.0
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 3.8e-39 164.9 76 98.7
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.2e-35 153.3 77 84.4
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.5e-35 152.9 77 84.4
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 2.0e-35 152.5 77 87.0
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 2.6e-35 152.1 77 85.7
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 2.6e-35 152.1 77 85.7
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 2.6e-35 152.1 77 85.7
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 9.8e-35 150.2 77 81.8
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 9.8e-35 150.2 77 83.1
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 2.2e-34 149.1 77 81.8
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 2.8e-34 148.7 77 83.1
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 2.8e-34 148.7 77 83.1
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 3.7e-34 148.3 77 81.8
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 6.3e-34 147.5 74 83.8
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.1e-33 146.7 77 81.8
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 4.1e-33 144.8 77 81.8
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.6e-32 142.9 77 79.2
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.6e-32 142.9 77 79.2
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 1.6e-32 142.9 77 79.2
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 1.6e-32 142.9 77 79.2
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 2.7e-32 142.1 77 77.9
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 2.7e-32 142.1 77 76.6
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 3.5e-32 141.7 77 81.8
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 3.5e-32 141.7 77 79.2
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 3.5e-32 141.7 77 77.9
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 3.5e-32 141.7 77 77.9
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 4.5e-32 141.4 77 77.9
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 4.5e-32 141.4 77 77.9
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 4.5e-32 141.4 77 77.9
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 4.5e-32 141.4 77 79.2
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 4.5e-32 141.4 77 77.9
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 5.9e-32 141.0 77 77.9
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 5.9e-32 141.0 77 77.9
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 5.9e-32 141.0 77 77.9
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 7.8e-32 140.6 77 76.6
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 7.8e-32 140.6 77 76.6
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 7.8e-32 140.6 77 76.6
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 7.8e-32 140.6 77 77.9
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 7.8e-32 140.6 77 77.9
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 1.0e-31 140.2 77 76.6
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.0e-31 140.2 77 79.2
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.0e-31 140.2 77 77.9
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.0e-31 140.2 77 77.9
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.3e-31 139.8 77 75.3
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.3e-31 139.8 77 76.6
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 1.3e-31 139.8 77 76.6
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 1.3e-31 139.8 77 76.6
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.7e-31 139.4 77 77.9
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.7e-31 139.4 77 77.9
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.7e-31 139.4 77 75.3
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 2.3e-31 139.0 77 75.3
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 2.3e-31 139.0 78 73.1
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 2.9e-31 138.7 77 76.6
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 2.9e-31 138.7 77 74.0
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 2.9e-31 138.7 77 75.3
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 2.9e-31 138.7 77 76.6
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 2.9e-31 138.7 77 76.6
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.9e-31 138.7 77 79.2
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.9e-31 138.7 77 77.9
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 2.9e-31 138.7 77 74.0
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 3.8e-31 138.3 77 75.3
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 3.8e-31 138.3 77 75.3
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 3.8e-31 138.3 77 74.0
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.8e-31 138.3 77 75.3
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 3.8e-31 138.3 77 75.3
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 3.8e-31 138.3 77 77.9
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 3.8e-31 138.3 77 74.0
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 5.0e-31 137.9 77 75.3
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 5.0e-31 137.9 77 75.3
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 5.0e-31 137.9 77 75.3
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 5.0e-31 137.9 77 75.3
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 5.0e-31 137.9 77 76.6
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 5.0e-31 137.9 77 74.0
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 5.0e-31 137.9 77 74.0
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 5.0e-31 137.9 77 74.0
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 5.0e-31 137.9 77 75.3
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 5.0e-31 137.9 77 75.3
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 6.6e-31 137.5 77 75.3
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 8.6e-31 137.1 77 72.7
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 8.6e-31 137.1 77 74.0
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 1.1e-30 136.7 77 75.3
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 1.1e-30 136.7 77 72.7
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 1.1e-30 136.7 77 75.3
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.5e-30 136.3 77 75.3
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.5e-30 136.3 77 75.3
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.5e-30 136.3 77 72.7
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 1.5e-30 136.3 77 74.0
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 1.5e-30 136.3 77 74.0
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 1.5e-30 136.3 77 74.0
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 1.9e-30 136.0 77 74.0
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 2.5e-30 135.6 77 72.7
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 3.3e-30 135.2 77 74.0
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 3.3e-30 135.2 77 72.7
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 4.3e-30 134.8 77 72.7
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 5.6e-30 134.4 77 71.4
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 5.6e-30 134.4 77 70.1
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 5.6e-30 134.4 77 74.0
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 5.6e-30 134.4 77 72.7
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 5.6e-30 134.4 74 74.3
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 5.6e-30 134.4 77 74.0
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 7.3e-30 134.0 77 71.4
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 7.3e-30 134.0 77 71.4
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 7.3e-30 134.0 77 71.4
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 7.3e-30 134.0 77 74.0
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 7.3e-30 134.0 73 75.3
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 7.3e-30 134.0 77 74.0
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 7.3e-30 134.0 77 74.0
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 9.5e-30 133.7 123 52.8
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 1.2e-29 133.3 77 72.7
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 1.2e-29 133.3 77 72.7
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 1.2e-29 133.3 77 72.7
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 1.2e-29 133.3 77 72.7
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 1.2e-29 133.3 77 68.8
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 1.6e-29 132.9 77 72.7
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 1.6e-29 132.9 77 72.7
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-29 132.9 77 72.7
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 2.1e-29 132.5 77 68.8
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 4.7e-29 131.3 77 71.4
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 4.7e-29 131.3 77 71.4
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 6.1e-29 131.0 77 72.7
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 8.0e-29 130.6 77 71.4
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 8.0e-29 130.6 77 67.5
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 8.0e-29 130.6 77 72.7
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 1.4e-28 129.8 77 68.8
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 2.3e-28 129.0 77 68.8
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 3.7e-26 121.7 77 64.9
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 8.3e-26 120.6 73 67.1
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 1.9e-25 119.4 77 62.3
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 2.4e-25 119.0 77 62.3
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 3.2e-25 118.6 79 65.8
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 3.2e-25 118.6 79 65.8
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 3.2e-25 118.6 79 65.8
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 3.2e-25 118.6 79 65.8
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 4.1e-25 118.2 63 82.5
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 7.0e-25 117.5 77 66.2
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 1.2e-24 116.7 77 61.0
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 1.2e-24 116.7 77 61.0
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 2.0e-24 115.9 77 61.0
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 2.0e-24 115.9 77 61.0
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 2.7e-24 115.5 78 66.7
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 2.7e-24 115.5 77 61.0
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 2.7e-24 115.5 63 79.4
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 3.5e-24 115.2 77 61.0
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 3.5e-24 115.2 77 61.0
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 3.5e-24 115.2 77 61.0
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 3.5e-24 115.2 77 61.0
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 3.5e-24 115.2 77 61.0
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 6.6e-23 110.9 77 61.0
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 2.5e-22 109.0 69 63.8
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 3.6e-21 105.1 69 60.9
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.8e-20 102.8 77 62.3
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.1e-20 102.1 73 56.2
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 4.9e-18 94.7 77 59.7
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.0e-15 87.0 77 50.6
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 1.3e-15 86.7 44 84.1
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.7e-15 86.3 79 57.0
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 9.5e-14 80.5 52 65.4
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.2e-13 80.1 74 52.7
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 8.1e-13 77.4 50 64.0
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.1e-12 77.0 77 44.2
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.8e-12 76.3 50 62.0
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 3.1e-12 75.5 43 69.8
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 6.8e-12 74.3 43 67.4
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.2e-10 69.3 34 88.2
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 8.3e-10 67.4 34 82.4
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.1e-08 62.8 32 84.4
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 3.0e-07 58.9 76 42.1


User provided reference genes

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