Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 3.7e-177 624.8 323 100.0
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 6.1e-127 458.0 327 78.0
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 6.5e-105 384.8 326 68.7
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 3.0e-49 199.9 353 39.7
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 3.9e-49 199.5 366 39.9
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.4e-46 190.3 369 40.1
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 2.6e-45 186.8 367 38.1
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.8e-44 183.0 365 37.5
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.8e-44 183.0 365 37.8
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 3.2e-43 179.9 365 37.3
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 5.4e-43 179.1 368 37.2
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 7.1e-43 178.7 369 36.6
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.2e-42 177.9 366 37.2
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 2.1e-42 177.2 368 37.5
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 2.1e-42 177.2 376 37.0
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 2.1e-42 177.2 370 37.3
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 2.7e-42 176.8 378 36.8
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 3.5e-42 176.4 364 36.5
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 3.5e-42 176.4 359 35.4
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 3.5e-42 176.4 364 37.1
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 4.6e-42 176.0 367 36.8
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 4.6e-42 176.0 366 38.0
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 6.0e-42 175.6 363 36.6
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 6.0e-42 175.6 364 34.9
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.0e-41 174.9 365 36.4
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 1.0e-41 174.9 365 38.1
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 2.3e-41 173.7 363 38.0
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 3.0e-41 173.3 372 35.2
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 3.9e-41 172.9 364 36.3
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 5.1e-41 172.6 363 36.6
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 6.6e-41 172.2 365 37.5
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 8.7e-41 171.8 367 36.5
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 8.7e-41 171.8 386 36.3
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.1e-40 171.4 363 36.4
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 1.5e-40 171.0 368 36.7
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.5e-40 171.0 366 36.6
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 1.5e-40 171.0 366 36.9
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 1.5e-40 171.0 372 35.5
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.5e-40 171.0 364 35.4
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.9e-40 170.6 351 38.7
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.9e-40 170.6 368 36.4
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 2.5e-40 170.2 368 36.4
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 2.5e-40 170.2 369 37.4
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 3.3e-40 169.9 365 36.4
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.3e-40 169.5 364 36.0
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 7.3e-40 168.7 364 36.0
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 7.3e-40 168.7 367 36.8
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 7.3e-40 168.7 342 37.4
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 7.3e-40 168.7 370 36.8
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.6e-39 167.5 368 36.7
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.6e-39 167.5 360 34.7
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 2.1e-39 167.2 370 36.5
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 2.1e-39 167.2 360 35.6
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 2.1e-39 167.2 361 38.8
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.8e-39 166.8 360 35.8
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.8e-39 166.8 365 35.3
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 3.6e-39 166.4 353 38.2
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 3.6e-39 166.4 371 36.1
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 4.8e-39 166.0 355 35.2
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 6.2e-39 165.6 357 36.4
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.2e-39 165.6 368 35.3
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.2e-39 165.6 368 35.3
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 6.2e-39 165.6 364 35.4
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 8.1e-39 165.2 360 34.7
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 8.1e-39 165.2 364 35.4
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 8.1e-39 165.2 363 37.2
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 8.1e-39 165.2 372 35.8
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.1e-38 164.9 360 35.0
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 1.4e-38 164.5 373 36.2
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.4e-38 164.5 364 34.9
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.8e-38 164.1 359 35.1
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.8e-38 164.1 368 35.3
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 3.1e-38 163.3 365 35.9
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 4.0e-38 162.9 372 34.1
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 4.0e-38 162.9 355 34.9
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.3e-38 162.5 359 34.5
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 5.3e-38 162.5 368 35.3
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 6.9e-38 162.2 359 34.5
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 6.9e-38 162.2 387 34.9
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 9.0e-38 161.8 353 37.1
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.2e-37 161.4 372 35.2
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.5e-37 161.0 347 36.0
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.5e-37 161.0 387 34.1
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 2.0e-37 160.6 376 34.3
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 2.6e-37 160.2 366 36.3
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 3.4e-37 159.8 361 36.6
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 5.8e-37 159.1 350 37.7
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 5.8e-37 159.1 367 33.5
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 7.6e-37 158.7 364 36.5
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 9.9e-37 158.3 368 33.7
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.3e-36 157.9 221 41.2
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 1.3e-36 157.9 370 35.1
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.7e-36 157.5 359 35.1
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 2.9e-36 156.8 380 33.4
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 2.9e-36 156.8 380 33.4
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 2.9e-36 156.8 367 34.3
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 2.9e-36 156.8 385 33.2
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 2.9e-36 156.8 341 34.9
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 3.8e-36 156.4 370 33.8
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 4.9e-36 156.0 341 35.2
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.1e-35 154.8 359 35.1
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.4e-35 154.5 352 34.9
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 3.2e-35 153.3 411 34.3
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 4.2e-35 152.9 364 34.1
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.2e-35 152.9 346 35.5
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 4.2e-35 152.9 296 38.5
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 9.3e-35 151.8 346 37.6
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.2e-34 151.4 341 36.1
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 1.6e-34 151.0 325 35.1
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 2.7e-34 150.2 364 34.1
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 2.7e-34 150.2 378 33.1
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.8e-33 147.5 383 32.9
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 2.3e-33 147.1 364 34.6
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.3e-33 147.1 361 33.0
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.3e-33 147.1 361 33.0
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 3.0e-33 146.7 353 35.7
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 2.5e-32 143.7 392 33.2
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 5.6e-32 142.5 364 33.8
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 9.6e-32 141.7 371 32.1
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.4e-30 137.9 214 41.6
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 6.9e-30 135.6 282 36.9
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.2e-29 134.8 205 41.5
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.2e-29 134.8 385 33.0
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 4.5e-29 132.9 326 34.7
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.3e-28 131.3 304 35.9
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 2.9e-28 130.2 387 30.7
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 4.9e-28 129.4 194 42.8
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.9e-27 127.5 355 33.2
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 2.4e-27 127.1 266 35.7
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 2.7e-26 123.6 353 33.4
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 4.6e-26 122.9 207 40.6
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 3.7e-23 113.2 137 46.7
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.0e-21 107.5 252 35.3
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 6.5e-20 102.4 189 39.7
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.4e-19 101.3 143 39.2
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 9.3e-19 98.6 171 39.8
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 2.7e-18 97.1 126 43.7
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 6.0e-18 95.9 81 50.6
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 3.0e-17 93.6 81 49.4
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 2.8e-15 87.0 84 45.2
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 3.7e-15 86.7 84 47.6
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 3.7e-15 86.7 101 43.6
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 1.2e-13 81.6 344 25.9
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 2.5e-11 73.9 224 32.6
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 4.3e-08 63.2 181 26.5
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 9.7e-08 62.0 318 28.9
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 9.7e-08 62.0 153 30.7
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-06 58.5 58 48.3


User provided reference genes

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