Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 0.0e+00 1307.4 650 100.0
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 5.3e-114 416.0 707 38.5
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.2e-103 380.2 735 35.4
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.6e-102 377.9 536 40.5
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 5.2e-101 372.9 655 36.0
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 6.7e-101 372.5 666 34.7
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 5.7e-100 369.4 590 38.8
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 9.7e-100 368.6 656 35.7
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 4.8e-99 366.3 596 37.4
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 6.3e-99 365.9 594 37.4
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.1e-98 365.2 656 36.0
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.4e-98 364.8 597 36.7
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.4e-98 364.0 582 36.4
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 5.3e-98 362.8 611 36.8
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 9.1e-98 362.1 651 35.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 2.0e-97 360.9 599 36.9
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 4.5e-97 359.8 570 38.8
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.0e-96 358.6 596 36.4
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.7e-96 357.8 592 37.7
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.2e-96 357.5 708 33.8
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 5.0e-96 356.3 596 36.2
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 5.0e-96 356.3 592 37.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 8.5e-96 355.5 602 37.2
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 2.5e-95 354.0 532 38.2
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 5.5e-95 352.8 635 35.1
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 5.5e-95 352.8 683 34.0
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.5e-95 352.8 686 34.8
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 7.2e-95 352.4 692 33.7
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.2e-94 351.7 652 36.7
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 2.1e-94 350.9 702 34.3
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.7e-94 350.5 646 36.4
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 6.1e-94 349.4 686 34.7
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 8.0e-94 349.0 657 35.0
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 8.0e-94 349.0 676 36.4
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.0e-93 348.6 531 38.2
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.0e-93 348.6 584 36.1
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 1.4e-93 348.2 592 36.0
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 1.2e-92 345.1 506 40.3
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.2e-92 345.1 590 36.3
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.5e-92 344.7 690 33.8
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 2.0e-92 344.4 533 37.7
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 4.4e-92 343.2 677 33.4
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 7.5e-92 342.4 663 34.2
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 7.5e-92 342.4 696 34.1
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 9.8e-92 342.0 696 33.6
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.3e-91 341.7 670 34.9
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.3e-91 341.7 529 38.0
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 2.2e-91 340.9 675 35.3
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 2.8e-91 340.5 588 35.7
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 2.8e-91 340.5 673 34.9
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 2.8e-91 340.5 531 37.9
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 2.8e-91 340.5 674 34.7
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.7e-91 340.1 707 33.9
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 3.7e-91 340.1 705 34.2
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.7e-91 340.1 590 35.6
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.1e-90 338.6 683 34.3
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.4e-90 337.4 708 33.2
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 3.1e-90 337.0 640 33.6
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 7.0e-90 335.9 696 33.5
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 4.5e-89 333.2 575 35.0
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 4.5e-89 333.2 696 32.8
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 5.9e-89 332.8 532 37.0
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 7.7e-89 332.4 615 34.5
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.0e-88 332.0 701 34.1
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.3e-88 331.6 705 32.9
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.3e-88 331.6 562 36.7
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.7e-88 331.3 596 35.1
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.7e-88 331.3 542 38.6
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.2e-88 330.9 705 32.9
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 2.9e-88 330.5 528 37.9
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 6.5e-88 329.3 710 33.7
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 6.5e-88 329.3 719 33.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 6.5e-88 329.3 588 34.5
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.1e-87 328.6 680 33.8
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.1e-87 328.6 641 34.0
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.1e-87 328.6 661 34.3
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 1.1e-87 328.6 653 34.9
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.5e-87 328.2 702 32.9
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.5e-87 327.4 710 33.5
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 3.2e-87 327.0 480 40.8
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 5.5e-87 326.2 703 32.9
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 9.4e-87 325.5 709 33.4
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.1e-86 324.3 701 32.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 6.1e-86 322.8 701 32.4
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 5.2e-85 319.7 735 32.1
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 5.2e-85 319.7 581 35.1
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 2.8e-83 313.9 650 33.1
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 4.9e-83 313.2 727 32.3
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 3.1e-82 310.5 643 33.6
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.2e-81 308.5 634 33.6
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.6e-81 308.1 706 31.3
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.0e-81 307.8 650 33.4
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 4.5e-81 306.6 688 33.3
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.0e-80 305.4 626 32.7
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 1.7e-80 304.7 648 33.3
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.3e-80 304.3 583 31.9
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.5e-79 301.6 643 32.8
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.1e-78 297.7 664 33.3
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 6.1e-78 296.2 466 36.5
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 3.0e-77 293.9 605 32.1
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 5.2e-77 293.1 653 33.4
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.2e-76 292.0 645 31.9
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 7.0e-74 282.7 658 32.5
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.6e-73 281.6 702 31.5
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.0e-72 278.9 680 30.3
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.0e-72 278.9 444 38.1
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.7e-72 278.1 686 31.9
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 2.5e-71 274.2 514 35.0
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 4.3e-71 273.5 517 34.8
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.2e-70 271.9 440 37.5
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.8e-70 270.8 547 32.9
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 4.9e-67 260.0 430 38.1
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.2e-65 255.4 535 32.3
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.6e-65 255.0 399 39.1
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 4.7e-62 243.4 361 39.1
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 8.1e-62 242.7 621 31.4
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 2.3e-61 241.1 658 28.7
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 9.8e-60 235.7 375 38.7
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 6.4e-59 233.0 344 40.1
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 2.4e-58 231.1 285 42.8
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.1e-58 230.3 358 38.5
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.4e-58 229.9 354 39.0
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.3e-51 208.8 378 35.7
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.1e-50 205.7 603 27.5
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 5.4e-50 203.4 188 56.9
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.7e-48 198.4 173 52.6
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 3.9e-48 197.2 598 27.1
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.7e-40 171.8 351 36.2
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.3e-39 167.2 227 40.5
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.1e-32 143.7 560 24.5
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 8.4e-27 126.3 437 25.4
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 2.5e-23 114.8 304 28.9
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.4e-21 108.2 404 25.5
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.0e-19 102.8 267 31.8
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.9e-18 98.6 156 35.9
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 5.5e-18 97.1 144 35.4
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 6.7e-16 90.1 259 30.1
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.4e-13 82.4 88 50.0
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 6.9e-13 80.1 159 34.6
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 6.9e-13 80.1 85 45.9
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 9.0e-13 79.7 208 32.2
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.5e-12 79.0 85 44.7
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.2e-10 71.2 93 41.9
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.3e-08 65.9 59 45.8
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 7.4e-07 60.1 81 35.8
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 2.8e-06 58.2 51 51.0


User provided reference genes

Program Settings