Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 0.0e+00 3435.6 1751 100.0
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 0.0e+00 1897.5 1739 59.7
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 4.3e-195 686.8 1775 31.2
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 4.9e-162 577.0 1801 29.7
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 4.7e-157 560.5 1187 33.7
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 4.0e-156 557.4 1816 28.4
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 1.1e-153 549.3 1464 30.5
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 4.3e-150 537.3 1815 28.2
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 4.3e-150 537.3 1596 30.0
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 4.1e-145 520.8 1350 32.2
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 2.0e-144 518.5 1484 30.7
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 3.3e-142 511.1 1833 28.7
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 3.2e-137 494.6 1803 28.2
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 9.2e-137 493.0 1811 27.2
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.5e-134 485.7 1929 28.2
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 7.3e-134 483.4 1849 27.8
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 5.2e-132 477.2 1535 29.6
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 4.4e-131 474.2 1815 28.5
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 1.3e-130 472.6 1854 27.2
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 1.1e-129 469.5 1728 28.2
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 1.1e-129 469.5 1817 27.7
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 3.5e-128 464.5 1830 27.2
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 2.3e-127 461.8 1474 29.0
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 1.2e-125 456.1 1355 29.5
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 1.8e-124 452.2 981 34.1
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 2.0e-123 448.7 1345 29.4
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 2.0e-123 448.7 1844 26.9
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 3.8e-122 444.5 1827 26.7
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 4.9e-122 444.1 1823 26.7
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 1.1e-121 443.0 1436 27.9
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 2.4e-121 441.8 1830 26.6
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 1.6e-120 439.1 1392 28.7
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 3.6e-117 427.9 1446 28.6
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 4.8e-117 427.6 1268 29.7
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 1.1e-116 426.4 1825 27.2
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 2.4e-116 425.2 1277 29.8
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 4.4e-115 421.0 1085 31.3
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 1.3e-114 419.5 1828 26.8
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 4.9e-114 417.5 1820 27.0
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 6.4e-114 417.2 1831 26.8
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 6.4e-114 417.2 1443 27.4
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 6.4e-114 417.2 1416 28.0
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 1.1e-113 416.4 1396 29.9
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 2.4e-113 415.2 1852 26.8
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 2.4e-113 415.2 1822 26.6
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 3.5e-112 411.4 1435 27.8
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 8.7e-111 406.8 1826 26.9
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 1.9e-110 405.6 1835 26.6
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 5.6e-110 404.1 1806 26.5
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 5.6e-110 404.1 1374 29.4
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 1.6e-109 402.5 1847 26.4
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 2.1e-109 402.1 1853 26.7
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 1.8e-108 399.1 1817 25.0
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 1.8e-108 399.1 1521 27.4
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 4.0e-108 397.9 1379 28.9
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 9.0e-108 396.7 1697 26.5
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 1.7e-106 392.5 1844 26.7
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 1.3e-103 382.9 1827 25.5
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 8.7e-103 380.2 696 37.8
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 3.3e-102 378.3 1836 25.1
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 4.9e-98 364.4 760 34.6
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 2.5e-97 362.1 1859 25.7
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 4.2e-81 308.1 891 29.5
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 1.2e-80 306.6 936 29.0
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 1.8e-79 302.8 769 30.6
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 1.5e-78 299.7 789 31.4
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 2.0e-78 299.3 733 33.4
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 3.1e-76 292.0 676 33.0
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 1.5e-75 289.7 677 33.1
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 1.1e-73 283.5 774 30.2
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.9e-73 282.7 749 31.1
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 3.2e-73 282.0 755 31.0
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.5e-73 281.2 341 45.5
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.5e-73 281.2 341 44.9
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 9.4e-73 280.4 730 31.5
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 1.2e-72 280.0 738 31.4
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.7e-72 278.1 269 52.8
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 6.1e-72 277.7 696 32.9
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.4e-71 276.6 269 52.8
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.1e-70 273.5 269 52.0
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 1.1e-70 273.5 327 45.6
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 4.4e-70 271.6 316 47.8
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 4.4e-70 271.6 342 45.0
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 9.7e-70 270.4 266 52.3
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 3.7e-69 268.5 270 51.9
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 1.8e-68 266.2 316 46.8
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 1.0e-66 260.4 352 43.2
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 1.3e-66 260.0 730 30.4
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 2.2e-66 259.2 673 32.7
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 2.2e-66 259.2 668 32.6
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 1.9e-65 256.1 687 31.7
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 2.3e-63 249.2 715 30.2
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 1.3e-61 243.4 719 29.5
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 5.9e-59 234.6 722 29.6
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 5.0e-58 231.5 294 43.2
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 5.0e-58 231.5 294 43.2
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 8.5e-58 230.7 732 28.8
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 5.5e-57 228.0 402 37.1
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 5.2e-55 221.5 536 31.3
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 2.7e-51 209.1 262 43.1
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 6.1e-48 198.0 561 30.3
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 4.5e-43 181.8 730 27.3
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 2.5e-41 176.0 1095 23.8
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 5.7e-38 164.9 242 38.4
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 1.3e-34 153.7 529 27.0
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 3.0e-34 152.5 132 56.1
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.9e-28 133.3 627 24.1
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 6.6e-26 124.8 244 34.8
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 3.3e-25 122.5 279 31.5
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 9.5e-25 120.9 144 45.8
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.1e-23 117.5 160 44.4
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 6.4e-21 108.2 498 25.7
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 1.1e-20 107.5 139 43.9
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 1.6e-19 103.6 199 31.7
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 2.8e-08 66.2 161 27.3
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 2.6e-06 59.7 144 28.5


User provided reference genes

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