Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb247290 Zea mays HOM05D003916 ORTHO05D004655 3.9e-47 191.0 92 100.0
Zm00001eb247230 Zea mays HOM05D003916 ORTHO05D004655 9.7e-46 186.4 92 97.8
Zm00001eb214480 Zea mays HOM05D003916 ORTHO05D004655 9.1e-20 100.1 49 98.0
Zm00001eb247210 Zea mays HOM05D003916 ORTHO05D004655 9.1e-20 100.1 49 98.0
Psat0s2770g0080 Pisum sativum HOM05D003916 ORTHO05D004655 1.2e-19 99.8 57 84.2
TPR.G3662 Trifolium pratense HOM05D003916 ORTHO05D004655 1.2e-19 99.8 57 84.2
Atru.chr11.2605 Acer truncatum HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
Aqoxy3G00363 Aquilegia oxysepala HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
CANSAT35G0488 Cannabis sativa HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
CiPaw.13G006500 Carya illinoinensis HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
Eucgr.G03369 Eucalyptus grandis HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
Lalb_Chr03g0040011 Lupinus albus HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
Manes.07G007100 Manihot esculenta HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
Medtr6g004540 Medicago truncatula HOM05D003916 ORTHO05D004655 1.6e-19 99.4 57 82.5
Potri.009G070900 Populus trichocarpa HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
QL04p008135 Quercus lobata HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
QL04p008511 Quercus lobata HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
Rhsim07G0056500 Rhododendron simsii HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
vmacro13676 Vaccinium macrocarpon HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
GSVIVG01036004001 Vitis vinifera HOM05D003916 ORTHO05D004655 1.6e-19 99.4 49 93.9
Actinidia19401 Actinidia chinensis HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
Cfa010792 Carpinus fangiana HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
COL.COLO4_04866 Corchorus olitorius HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
COL.COLO4_11374 Corchorus olitorius HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
Haze_03179 Corylus avellana HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
Dinv43429 Davidia involucrata HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
Duzib138G1764 Durio zibethinus HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
FvH4_2g07830 Fragaria vesca HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
FAN15G2464 Fragaria x ananassa HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
FAN20G2116 Fragaria x ananassa HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
FAN24G3392 Fragaria x ananassa HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
FAN27G3016 Fragaria x ananassa HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
Hma1.2p1_0495F.1_g165640 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
Lj3g0019679 Lotus japonicus HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
MD05G1071600 Malus domestica HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
MD10G1083600 Malus domestica HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
Prupe.8G106600 Prunus persica HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
PGR031G2324 Punica granatum HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
RcHm_v2.0_Chr6g0262241 Rosa chinensis HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
THA.LOC104801974 Tarenaya hassleriana HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
TAR633G2550 Trochodendron aralioides HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
TAR636G0073 Trochodendron aralioides HOM05D003916 ORTHO05D004655 2.0e-19 99.0 49 91.8
CiPaw.14G001100 Carya illinoinensis HOM05D003916 ORTHO05D004655 2.7e-19 98.6 49 91.8
MBI04_g41600_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 2.7e-19 98.6 49 89.8
Medtr4g037750 Medicago truncatula HOM05D003916 ORTHO05D004655 2.7e-19 98.6 57 82.5
Aa31LG10G7160 Aethionema arabicum HOM05D003916 ORTHO05D004655 3.5e-19 98.2 87 57.5
DCAR_022384 Daucus carota HOM05D003916 ORTHO05D004655 3.5e-19 98.2 49 91.8
BcaB01g00447 Brassica carinata HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
BcaB02g08590 Brassica carinata HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
BcaC02g09283 Brassica carinata HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
BcaNung06090 Brassica carinata HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
A04p07280 Brassica napus HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
A09p45160 Brassica napus HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
C04p40890 Brassica napus HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
C08p27350 Brassica napus HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
BolC4t25674H Brassica oleracea HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
BolC8t50352H Brassica oleracea HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
BraA04t16424Z Brassica rapa HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
BraA09t39977Z Brassica rapa HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
CSS0038705 Camellia sinensis var. sinensis HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
Gohir.A05G320501 Gossypium hirsutum HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
Gohir.A08G054500 Gossypium hirsutum HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
Gohir.D05G317100 Gossypium hirsutum HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
Gohir.D08G064200 Gossypium hirsutum HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
Gorai.009G339400 Gossypium raimondii HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
HanXRQChr01g0016491 Helianthus annuus HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
Hma1.2p1_0184F.1_g081310 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
Os07g0172500 Oryza sativa ssp. japonica HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 91.8
Thecc.01G409200 Theobroma cacao HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
TWI09G0558 Tripterygium wilfordii HOM05D003916 ORTHO05D004655 4.5e-19 97.8 49 89.8
ATR0751G171 Amborella trichopoda HOM05D003916 ORTHO05D004655 5.9e-19 97.4 49 89.8
ClCG10G012300 Citrullus lanatus HOM05D003916 ORTHO05D004655 5.9e-19 97.4 49 89.8
Ciclev10033103m.g Citrus clementina HOM05D003916 ORTHO05D004655 5.9e-19 97.4 49 89.8
Cc03_g12460 Coffea canephora HOM05D003916 ORTHO05D004655 5.9e-19 97.4 49 91.8
MELO3C023983.2 Cucumis melo HOM05D003916 ORTHO05D004655 5.9e-19 97.4 49 89.8
CsaV3_3G032080 Cucumis sativus L. HOM05D003916 ORTHO05D004655 5.9e-19 97.4 49 89.8
Glyma.09G228500 Glycine max HOM05D003916 ORTHO05D004655 5.9e-19 97.4 49 89.8
Glyma.12G008000 Glycine max HOM05D003916 ORTHO05D004655 5.9e-19 97.4 49 89.8
Phvul.011G010100 Phaseolus vulgaris HOM05D003916 ORTHO05D004655 5.9e-19 97.4 49 89.8
Sabra09G0053700 Salix brachista HOM05D003916 ORTHO05D004655 5.9e-19 97.4 48 93.8
VMungo1127G0323 Vigna mungo HOM05D003916 ORTHO05D004655 5.9e-19 97.4 49 89.8
AUR62018571 Chenopodium quinoa HOM05D003916 ORTHO05D004655 7.7e-19 97.1 49 89.8
AUR62020845 Chenopodium quinoa HOM05D003916 ORTHO05D004655 7.7e-19 97.1 49 89.8
AUR62043813 Chenopodium quinoa HOM05D003916 ORTHO05D004655 7.7e-19 97.1 49 89.8
PSO591G0016 Papaver somniferum HOM05D003916 ORTHO05D004655 7.7e-19 97.1 57 80.7
Sc23g0005950 Simmondsia chinensis HOM05D003916 ORTHO05D004655 7.7e-19 97.1 49 89.8
AL5G32640 Arabidopsis lyrata HOM05D003916 ORTHO05D004655 1.0e-18 96.7 49 87.8
arahy.Tifrunner.gnm1.ann1.8R0KJ7 Arachis hypogaea HOM05D003916 ORTHO05D004655 1.0e-18 96.7 49 87.8
arahy.Tifrunner.gnm1.ann1.YBFT0T Arachis hypogaea HOM05D003916 ORTHO05D004655 1.0e-18 96.7 49 87.8
Carub.0005s1841 Capsella rubella HOM05D003916 ORTHO05D004655 1.0e-18 96.7 49 87.8
CARHR161800 Cardamine hirsuta HOM05D003916 ORTHO05D004655 1.0e-18 96.7 49 87.8
Ca_04149_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 1.0e-18 96.7 49 89.8
Ca_22196_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 1.0e-18 96.7 49 89.8
Manes.10G140600 Manihot esculenta HOM05D003916 ORTHO05D004655 1.0e-18 96.7 49 91.8
Nn7g36243 Nelumbo nucifera HOM05D003916 ORTHO05D004655 1.0e-18 96.7 49 89.8
Sp5g10210 Schrenkiella parvula HOM05D003916 ORTHO05D004655 1.0e-18 96.7 49 87.8
HPP92_009912 Vanilla planifolia HOM05D003916 ORTHO05D004655 1.0e-18 96.7 49 91.8
Peaxi162Scf00948g00222 Petunia axillaris HOM05D003916 ORTHO05D004655 1.3e-18 96.3 49 89.8
Sed0020332 Sechium edule HOM05D003916 ORTHO05D004655 1.3e-18 96.3 49 87.8
Peaxi162Scf00619g00024 Petunia axillaris HOM05D003916 ORTHO05D004655 1.7e-18 95.9 49 87.8
Hund20252 Selenicereus undatus HOM05D003916 ORTHO05D004655 1.7e-18 95.9 49 89.8
AT3G52090 Arabidopsis thaliana HOM05D003916 ORTHO05D004655 2.2e-18 95.5 49 87.8
MSTRG.9650 Avicennia marina HOM05D003916 ORTHO05D004655 2.2e-18 95.5 49 89.8
CDE10G1144 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 2.2e-18 95.5 49 87.8
ECA234G4622 Erigeron canadensis HOM05D003916 ORTHO05D004655 2.2e-18 95.5 49 87.8
Thhalv10010833m.g Eutrema salsugineum HOM05D003916 ORTHO05D004655 2.2e-18 95.5 49 85.7
Gorai.004G066500 Gossypium raimondii HOM05D003916 ORTHO05D004655 2.2e-18 95.5 47 91.5
PSO832G0252 Papaver somniferum HOM05D003916 ORTHO05D004655 2.2e-18 95.5 57 78.9
SGA_v2.0_scaffold7G04094 Striga asiatica HOM05D003916 ORTHO05D004655 2.2e-18 95.5 49 89.8
SGA_v2.0_scaffold114G31877 Striga asiatica HOM05D003916 ORTHO05D004655 2.9e-18 95.1 49 87.8
unitig_0.g2398 Utricularia gibba HOM05D003916 ORTHO05D004655 2.9e-18 95.1 49 87.8
EL10Ac3g07468 Beta vulgaris HOM05D003916 ORTHO05D004655 3.8e-18 94.7 49 87.8
Nitab4.5_0005283g0050 Nicotiana tabacum HOM05D003916 ORTHO05D004655 3.8e-18 94.7 49 87.8
Oeu048996.1 Olea europaea HOM05D003916 ORTHO05D004655 3.8e-18 94.7 49 87.8
CAN.G631.46 Capsicum annuum HOM05D003916 ORTHO05D004655 5.0e-18 94.4 49 87.8
Migut.D01881 Erythranthe guttata HOM05D003916 ORTHO05D004655 5.0e-18 94.4 49 87.8
Migut.O00412 Erythranthe guttata HOM05D003916 ORTHO05D004655 5.0e-18 94.4 49 87.8
Nitab4.5_0000130g0090 Nicotiana tabacum HOM05D003916 ORTHO05D004655 5.0e-18 94.4 49 85.7
Nitab4.5_0002959g0030 Nicotiana tabacum HOM05D003916 ORTHO05D004655 5.0e-18 94.4 48 89.6
Nitab4.5_0010117g0010 Nicotiana tabacum HOM05D003916 ORTHO05D004655 5.0e-18 94.4 49 85.7
SalBow8G4163 Salvia bowleyana HOM05D003916 ORTHO05D004655 5.0e-18 94.4 49 87.8
Solyc11g069910.2 Solanum lycopersicum HOM05D003916 ORTHO05D004655 5.0e-18 94.4 49 87.8
Sopen11g028370 Solanum pennellii HOM05D003916 ORTHO05D004655 5.0e-18 94.4 49 87.8
PGSC0003DMG400008095 Solanum tuberosum HOM05D003916 ORTHO05D004655 5.0e-18 94.4 49 87.8
arahy.Tifrunner.gnm1.ann1.KPCT5J Arachis hypogaea HOM05D003916 ORTHO05D004655 6.5e-18 94.0 49 85.7
arahy.Tifrunner.gnm1.ann1.U5V8MN Arachis hypogaea HOM05D003916 ORTHO05D004655 6.5e-18 94.0 49 85.7
Oeu061209.2 Olea europaea HOM05D003916 ORTHO05D004655 8.5e-18 93.6 49 85.7
Zm00001eb247220 Zea mays HOM05D003916 ORTHO05D004655 8.5e-18 93.6 49 91.8
ECA248G0794 Erigeron canadensis HOM05D003916 ORTHO05D004655 1.1e-17 93.2 57 75.4
Zm00001eb247270 Zea mays HOM05D003916 ORTHO05D004655 1.5e-17 92.8 49 91.8
PSO063G3578 Papaver somniferum HOM05D003916 ORTHO05D004655 2.5e-17 92.0 56 76.8
PSO782G0643 Papaver somniferum HOM05D003916 ORTHO05D004655 2.5e-17 92.0 56 76.8
Haze_25581 Corylus avellana HOM05D003916 ORTHO05D004655 3.2e-17 91.7 49 87.8
Sed0017618 Sechium edule HOM05D003916 ORTHO05D004655 3.2e-17 91.7 49 83.7
MELO3C023562.2 Cucumis melo HOM05D003916 ORTHO05D004655 7.2e-17 90.5 49 83.7
CsaV3_7G030940 Cucumis sativus L. HOM05D003916 ORTHO05D004655 7.2e-17 90.5 49 83.7
Pp3c2_2740 Physcomitrium patens HOM05D003916 ORTHO05D004655 7.2e-17 90.5 49 81.6
SEGI_28477 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 7.2e-17 90.5 49 81.6
Sc10g0000140 Simmondsia chinensis HOM05D003916 ORTHO05D004655 9.5e-17 90.1 49 85.7
AagrBONN_evm.TU.Sc2ySwM_368.1572 Anthoceros agrestis HOM05D003916 ORTHO05D004655 1.2e-16 89.7 49 79.6
SMO145G0130 Selaginella moellendorffii HOM05D003916 ORTHO05D004655 1.6e-16 89.4 49 77.6
Mapoly0064s0055 Marchantia polymorpha HOM05D003916 ORTHO05D004655 2.1e-16 89.0 49 77.6
Pp3c14_14340 Physcomitrium patens HOM05D003916 ORTHO05D004655 2.1e-16 89.0 49 79.6
SEGI_19516 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 6.1e-16 87.4 49 77.6
SEGI_39087 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 6.1e-16 87.4 49 77.6
Dinv09344 Davidia involucrata HOM05D003916 ORTHO05D004655 1.4e-15 86.3 51 80.4
CiPaw.07G027500 Carya illinoinensis HOM05D003916 ORTHO05D004655 4.0e-15 84.7 57 68.4
Zm00001eb247300 Zea mays HOM05D003916 ORTHO05D004655 5.2e-15 84.3 49 87.8
Cpa.g.sc125.23 Carica papaya HOM05D003916 ORTHO05D004655 1.2e-14 83.2 75 58.7
CiPaw.15G004900 Carya illinoinensis HOM05D003916 ORTHO05D004655 2.0e-14 82.4 48 75.0
Duzib133G0053 Durio zibethinus HOM05D003916 ORTHO05D004655 2.6e-14 82.0 49 79.6
Lsat_1_v5_gn_1_106300 Lactuca sativa HOM05D003916 ORTHO05D004655 2.6e-14 82.0 49 79.6
Zm00001eb247250 Zea mays HOM05D003916 ORTHO05D004655 1.3e-13 79.7 41 95.1
PRCOL_00004893 Prasinoderma coloniale HOM05D003916 ORTHO05D004655 1.2e-11 73.2 49 63.3
ClCG09G004040 Citrullus lanatus HOM05D003916 ORTHO05D004655 2.7e-11 72.0 87 47.1
Cre13.g565550 Chlamydomonas reinhardtii HOM05D003916 ORTHO05D004655 1.7e-10 69.3 52 57.7
CiPaw.03G260400 Carya illinoinensis HOM05D003916 ORTHO05D004655 5.0e-10 67.8 75 48.0
MCO15G160 Micromonas commoda HOM05D003916 ORTHO05D004655 6.6e-10 67.4 49 53.1
Haze_26797 Corylus avellana HOM05D003916 ORTHO05D004655 4.3e-09 64.7 86 37.2
Haze_27709 Corylus avellana HOM05D003916 ORTHO05D004655 4.3e-09 64.7 86 37.2
CDE10G1147 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 9.5e-09 63.5 30 96.7
Zm00001eb247280 Zea mays HOM05D003916 ORTHO05D004655 3.0e-07 58.5 33 81.8


User provided reference genes

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