Gene: AT3G52090

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G52090
  • Transcript Identifier AT3G52090.1
  • Gene Type Coding gene
  • Location Chr3 : 19318069-19318998 : negative

Gene Family Information

  • ID HOM05D003916
  • #Genes/#Species 178/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G52090.1
  • symbol NRPB11
  • uniprot Q38859

Descriptions

  • Description DNA-directed RNA polymerase, RBP11-like protein
  • Computational description NRPB11; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, holoenzyme, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (InterPro:IPR008193), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: RNApolymerase 14 kDa subunit (TAIR:AT2G29540.2); Has 990 Blast hits to 990 proteins in 256 species: Archae - 62; Bacteria - 0; Metazoa - 336; Fungi - 323; Plants - 106; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006366
IEA
Gene Ontologytranscription by RNA polymerase II
GO:0006366
IEA
InterProtranscription by RNA polymerase II
GO:0006351
IEA
GOA Databasetranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001055
IEA
Gene OntologyRNA polymerase II activity
GO:0001055
IEA
InterProRNA polymerase II activity
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003899
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0003899
ISS, IBA
Gene OntologyDNA-directed 5'-3' RNA polymerase activity1 2
GO:0003677
IEA
Gene OntologyDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005665
IDA, IPI
IBA
IEA
Gene OntologyRNA polymerase II, core complex2 3
GO:0005665
IEA
InterProRNA polymerase II, core complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0000419
IDA, IPI
Gene OntologyRNA polymerase V complex3
GO:0000418
IDA, IPI
Gene OntologyRNA polymerase IV complex3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036603 RNA polymerase, RBP11-like subunit
IPR037685 RNA polymerase RBP11
IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain
Mapman id Description
15.1.6.9 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 11