Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1483.8 747 100.0
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1407.1 747 94.1
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1250.0 746 83.2
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1249.2 747 83.1
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1246.9 748 83.4
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1244.6 747 83.1
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1243.8 747 82.9
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1243.8 747 83.0
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1243.4 745 82.8
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1243.0 747 82.9
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1241.5 747 82.7
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1239.2 747 83.0
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1236.1 747 82.9
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1235.7 747 82.6
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1235.7 747 82.2
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1235.3 747 82.7
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1235.3 747 82.9
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1235.3 747 81.8
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1234.2 747 82.6
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1233.0 747 82.2
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1232.2 747 81.8
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1231.9 747 81.8
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1231.5 747 83.0
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1231.5 748 82.4
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1229.9 746 81.6
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1229.9 747 82.1
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1229.9 749 82.2
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1229.2 747 82.2
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1228.8 747 82.1
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1228.8 748 82.2
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1228.0 748 82.6
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1227.6 747 82.1
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1227.6 747 81.8
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1227.2 747 82.2
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1226.8 747 81.9
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1226.8 747 81.3
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1226.5 747 81.8
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1226.1 747 81.4
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1226.1 747 81.4
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1225.3 748 82.5
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1224.9 753 81.0
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1224.9 747 81.8
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1223.4 749 82.2
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1223.4 747 81.4
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1223.4 747 81.5
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1223.4 746 81.8
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1222.6 747 81.3
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1222.2 749 81.3
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1222.2 747 81.5
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1222.2 747 81.7
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1220.7 747 81.3
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1219.5 747 81.4
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1219.1 747 81.1
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1219.1 747 81.4
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1219.1 745 81.2
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1218.4 746 81.2
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1218.4 746 81.5
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1218.4 747 81.1
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1218.4 747 81.1
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1218.0 747 81.5
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1217.6 745 81.5
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1217.6 746 81.4
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1217.2 747 81.7
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1217.2 747 81.9
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1216.8 746 81.5
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1216.4 746 81.2
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1215.3 747 81.4
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1214.9 748 80.7
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1214.5 741 81.5
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1214.1 747 81.3
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1214.1 746 81.0
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1214.1 746 80.8
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1214.1 749 81.6
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1213.7 747 81.0
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1213.4 747 80.7
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1213.4 746 81.0
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1213.0 745 81.2
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1213.0 751 80.8
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1212.6 747 81.1
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1212.2 746 80.8
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1212.2 747 81.4
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1212.2 749 81.7
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1211.1 747 81.1
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1211.1 748 81.1
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1210.3 747 80.7
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1210.3 749 81.6
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1209.9 746 80.7
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1209.1 774 78.4
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1208.0 743 81.2
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1207.2 747 80.6
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1206.0 724 82.5
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1205.3 750 81.5
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1204.9 747 81.3
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1204.1 746 80.3
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1203.7 713 84.4
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1201.8 748 79.7
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1201.4 747 79.9
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1200.7 707 84.7
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1198.7 769 79.2
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1198.7 769 79.2
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1196.4 742 80.6
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1195.6 698 84.8
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1194.5 749 79.4
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1193.7 748 79.5
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1191.0 779 77.8
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1189.5 748 79.0
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1184.5 741 80.4
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1182.5 763 78.2
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1182.2 810 74.6
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1179.9 828 73.3
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1172.1 717 82.0
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1170.2 713 81.8
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1151.7 713 80.9
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1151.0 669 85.2
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1150.2 747 78.0
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1144.8 748 76.6
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1135.6 733 79.1
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1117.8 752 76.6
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1112.8 631 87.2
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1096.3 687 78.2
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1094.3 720 76.0
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1092.4 679 80.0
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1092.4 714 75.9
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1091.3 707 76.1
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1087.4 617 86.5
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.2e-308 1062.8 722 72.9
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 2.0e-290 1002.3 641 78.3
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 8.0e-239 830.9 668 61.5
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 5.0e-233 811.6 698 60.2
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 8.6e-217 757.7 645 61.2
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.3e-216 755.7 541 73.6
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 7.8e-202 708.0 454 79.5
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.1e-198 696.0 524 70.0
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.9e-188 662.1 747 51.4
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 1.1e-187 661.0 469 72.3
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 9.2e-187 657.9 745 51.1
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 1.4e-129 468.0 263 87.1
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 2.2e-127 460.7 434 59.4
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 5.0e-84 316.6 223 72.2
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 2.0e-80 304.7 579 36.4
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 4.4e-72 276.9 152 88.8
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 7.1e-70 269.6 142 92.3
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 9.0e-57 226.1 170 69.4
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 1.5e-40 172.2 294 36.7
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.2e-37 162.5 84 89.3
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 4.8e-34 150.6 80 87.5
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.2e-30 137.5 99 69.7
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 4.3e-27 127.5 72 83.3
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 5.3e-25 120.6 71 80.3
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 5.5e-22 110.5 81 67.9
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 2.1e-21 108.6 69 72.5
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 5.1e-20 104.0 70 71.4
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 7.4e-19 100.1 73 71.2
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 1.1e-17 96.3 98 55.1
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.8e-17 95.5 67 68.7
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 5.3e-17 94.0 222 32.9
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.5e-16 92.4 67 65.7
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 3.8e-15 87.8 92 51.1
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 6.1e-13 80.5 92 48.9
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 1.4e-12 79.3 71 67.6
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.4e-12 79.3 67 58.2
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 2.3e-12 78.6 47 78.7
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 6.3e-10 70.5 43 69.8
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 1.4e-09 69.3 40 80.0
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 5.9e-08 63.9 48 64.6
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.2e-07 62.0 47 63.8
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.9e-07 61.6 46 65.2


User provided reference genes

Program Settings