Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb235780 Zea mays HOM05D001978 ORTHO05D019388 4.0e-53 211.1 101 100.0
Zm00001eb015590 Zea mays HOM05D001978 ORTHO05D019388 7.1e-50 200.3 101 94.1
Zm00001eb280190 Zea mays HOM05D001978 ORTHO05D003036 3.0e-40 168.3 80 97.5
Zm00001eb360240 Zea mays HOM05D001978 ORTHO05D019388 1.5e-39 166.0 80 95.0
Zm00001eb306690 Zea mays HOM05D001978 ORTHO05D019388 1.6e-38 162.5 80 95.0
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 8.5e-27 123.6 65 92.3
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 2.5e-26 122.1 65 90.8
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 1.0e-24 116.7 65 84.6
GSVIVG01001441001 Vitis vinifera HOM05D001978 ORTHO05D003036 6.5e-19 97.4 65 75.4
Zm00001eb020490 Zea mays HOM05D001978 ORTHO05D019388 6.5e-19 97.4 48 97.9
SGA_v2.0_scaffold4G02473 Striga asiatica HOM05D001978 ORTHO05D003036 1.1e-18 96.7 87 59.8
Cc00_g06050 Coffea canephora HOM05D001978 ORTHO05D003036 2.5e-18 95.5 65 75.4
Dinv07425 Davidia involucrata HOM05D001978 ORTHO05D003036 2.5e-18 95.5 65 73.8
Dinv43400 Davidia involucrata HOM05D001978 ORTHO05D003036 3.2e-18 95.1 65 73.8
ATR0057G059 Amborella trichopoda HOM05D001978 ORTHO05D003036 4.2e-18 94.7 65 72.3
Duzib133G0356 Durio zibethinus HOM05D001978 ORTHO05D003036 4.2e-18 94.7 65 72.3
Oeu006547.2 Olea europaea HOM05D001978 ORTHO05D003036 4.2e-18 94.7 65 73.8
Hund16631 Selenicereus undatus HOM05D001978 ORTHO05D003036 4.2e-18 94.7 68 69.1
Sc14g0004930 Simmondsia chinensis HOM05D001978 ORTHO05D003036 4.2e-18 94.7 65 73.8
Actinidia21535 Actinidia chinensis HOM05D001978 ORTHO05D003036 7.2e-18 94.0 65 72.3
Lj9A642T48 Lonicera japonica HOM05D001978 ORTHO05D003036 7.2e-18 94.0 67 71.6
Manes.10G135100 Manihot esculenta HOM05D001978 ORTHO05D003036 7.2e-18 94.0 65 70.8
Thecc.01G404200 Theobroma cacao HOM05D001978 ORTHO05D003036 7.2e-18 94.0 65 72.3
TAR369G0424 Trochodendron aralioides HOM05D001978 ORTHO05D003036 9.4e-18 93.6 65 72.3
vmacro13704 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 9.4e-18 93.6 64 73.4
vmacro21140 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 9.4e-18 93.6 65 72.3
Atru.chr11.2543 Acer truncatum HOM05D001978 ORTHO05D003036 1.2e-17 93.2 65 70.8
HPP92_001385 Vanilla planifolia HOM05D001978 ORTHO05D003036 1.2e-17 93.2 65 67.7
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 1.6e-17 92.8 65 70.8
COL.COLO4_12328 Corchorus olitorius HOM05D001978 ORTHO05D003036 1.6e-17 92.8 65 70.8
Potri.001G260900 Populus trichocarpa HOM05D001978 ORTHO05D003036 1.6e-17 92.8 65 69.2
SalBow5G1268 Salvia bowleyana HOM05D001978 ORTHO05D003036 1.6e-17 92.8 65 69.2
SalBow5G4104 Salvia bowleyana HOM05D001978 ORTHO05D003036 1.6e-17 92.8 65 69.2
CSS0022031 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 2.1e-17 92.4 65 69.2
CAN.G909.18 Capsicum annuum HOM05D001978 ORTHO05D003036 2.1e-17 92.4 65 70.8
ClCG10G012130 Citrullus lanatus HOM05D001978 ORTHO05D003036 2.1e-17 92.4 65 69.2
MELO3C024002.2 Cucumis melo HOM05D001978 ORTHO05D003036 2.1e-17 92.4 65 69.2
CsaV3_3G031890 Cucumis sativus L. HOM05D001978 ORTHO05D003036 2.1e-17 92.4 65 69.2
MD07G1024900 Malus domestica HOM05D001978 ORTHO05D003036 2.1e-17 92.4 65 69.2
Prupe.2G024600 Prunus persica HOM05D001978 ORTHO05D003036 2.1e-17 92.4 65 69.2
Sed0016255 Sechium edule HOM05D001978 ORTHO05D003036 2.1e-17 92.4 65 67.7
Solyc01g088020.3 Solanum lycopersicum HOM05D001978 ORTHO05D003036 2.1e-17 92.4 65 70.8
Sopen01g034910 Solanum pennellii HOM05D001978 ORTHO05D003036 2.1e-17 92.4 65 70.8
CANSAT80G0138 Cannabis sativa HOM05D001978 ORTHO05D003036 2.7e-17 92.0 65 70.8
DCAR_031813 Daucus carota HOM05D001978 ORTHO05D003036 2.7e-17 92.0 65 67.7
MD02G1300000 Malus domestica HOM05D001978 ORTHO05D003036 2.7e-17 92.0 65 69.2
Manes.07G011900 Manihot esculenta HOM05D001978 ORTHO05D003036 2.7e-17 92.0 65 69.2
Oeu014599.1 Olea europaea HOM05D001978 ORTHO05D003036 3.6e-17 91.7 65 72.3
Rhsim01G0124800 Rhododendron simsii HOM05D001978 ORTHO05D003036 3.6e-17 91.7 65 70.8
Sabra16G0159500 Salix brachista HOM05D001978 ORTHO05D003036 3.6e-17 91.7 65 67.7
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 4.7e-17 91.3 65 70.8
Peaxi162Scf01108g00213 Petunia axillaris HOM05D001978 ORTHO05D003036 4.7e-17 91.3 65 70.8
SGA_v2.0_scaffold119G32768 Striga asiatica HOM05D001978 ORTHO05D003036 4.7e-17 91.3 65 67.7
TAR633G0096 Trochodendron aralioides HOM05D001978 ORTHO05D003036 4.7e-17 91.3 65 69.2
MSTRG.17003 Avicennia marina HOM05D001978 ORTHO05D003036 6.1e-17 90.9 65 67.7
Migut.B01256 Erythranthe guttata HOM05D001978 ORTHO05D003036 6.1e-17 90.9 65 67.7
MBI13_g11939_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 6.1e-17 90.9 65 67.7
Rhsim07G0059400 Rhododendron simsii HOM05D001978 ORTHO05D003036 6.1e-17 90.9 65 69.2
Haze_03128 Corylus avellana HOM05D001978 ORTHO05D003036 7.9e-17 90.5 73 60.3
FvH4_7g01850 Fragaria vesca HOM05D001978 ORTHO05D003036 7.9e-17 90.5 68 67.6
FAN01G0983 Fragaria x ananassa HOM05D001978 ORTHO05D003036 7.9e-17 90.5 68 67.6
FAN03G2968 Fragaria x ananassa HOM05D001978 ORTHO05D003036 7.9e-17 90.5 68 67.6
FAN06G2210 Fragaria x ananassa HOM05D001978 ORTHO05D003036 7.9e-17 90.5 68 67.6
FAN10G1732 Fragaria x ananassa HOM05D001978 ORTHO05D003036 7.9e-17 90.5 68 67.6
CiPaw.13G008500 Carya illinoinensis HOM05D001978 ORTHO05D003036 1.0e-16 90.1 65 64.6
Sc11g0009020 Simmondsia chinensis HOM05D001978 ORTHO05D003036 1.0e-16 90.1 65 69.2
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 1.4e-16 89.7 65 67.7
Cfa022633 Carpinus fangiana HOM05D001978 ORTHO05D003036 1.4e-16 89.7 65 67.7
Ciclev10030570m.g Citrus clementina HOM05D001978 ORTHO05D003036 1.4e-16 89.7 65 67.7
HanXRQChr01g0015661 Helianthus annuus HOM05D001978 ORTHO05D003036 1.4e-16 89.7 65 66.2
HanXRQChr16g0524831 Helianthus annuus HOM05D001978 ORTHO05D003036 1.4e-16 89.7 65 67.7
Lsat_1_v5_gn_4_32040 Lactuca sativa HOM05D001978 ORTHO05D003036 1.4e-16 89.7 65 67.7
RcHm_v2.0_Chr1g0318481 Rosa chinensis HOM05D001978 ORTHO05D003036 1.8e-16 89.4 65 69.2
Sabra09G0040500 Salix brachista HOM05D001978 ORTHO05D003036 1.8e-16 89.4 65 66.2
ECA236G3334 Erigeron canadensis HOM05D001978 ORTHO05D003036 2.3e-16 89.0 65 66.2
Nitab4.5_0006695g0020 Nicotiana tabacum HOM05D001978 ORTHO05D003036 2.3e-16 89.0 65 67.7
Actinidia06286 Actinidia chinensis HOM05D001978 ORTHO05D003036 3.0e-16 88.6 65 69.2
CiPaw.14G004000 Carya illinoinensis HOM05D001978 ORTHO05D003036 3.0e-16 88.6 65 66.2
Haze_03129 Corylus avellana HOM05D001978 ORTHO05D003036 3.0e-16 88.6 65 66.2
Duzib268G1826 Durio zibethinus HOM05D001978 ORTHO05D003036 3.0e-16 88.6 65 69.2
HanXRQChr06g0183381 Helianthus annuus HOM05D001978 ORTHO05D003036 3.0e-16 88.6 65 66.2
SalBow6G2677 Salvia bowleyana HOM05D001978 ORTHO05D003036 3.0e-16 88.6 65 66.2
EL10Ac2g04382 Beta vulgaris HOM05D001978 ORTHO05D003036 3.9e-16 88.2 65 67.7
ECA234G3788 Erigeron canadensis HOM05D001978 ORTHO05D003036 3.9e-16 88.2 65 67.7
BcaC07g38951 Brassica carinata HOM05D001978 ORTHO05D003036 5.1e-16 87.8 85 54.1
BolC8t49521H Brassica oleracea HOM05D001978 ORTHO05D003036 5.1e-16 87.8 85 54.1
MBI19_g16674_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 5.1e-16 87.8 64 70.3
Nitab4.5_0002888g0010 Nicotiana tabacum HOM05D001978 ORTHO05D003036 5.1e-16 87.8 65 67.7
Potri.009G055400 Populus trichocarpa HOM05D001978 ORTHO05D003036 5.1e-16 87.8 65 66.2
THA.LOC104801971 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 5.1e-16 87.8 64 67.2
C08p18950 Brassica napus HOM05D001978 ORTHO05D003036 6.7e-16 87.4 85 52.9
CDE02G0774 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 6.7e-16 87.4 65 66.2
CDE09G0202 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 6.7e-16 87.4 65 66.2
Gohir.D12G103000 Gossypium hirsutum HOM05D001978 ORTHO05D003036 6.7e-16 87.4 65 67.7
Gorai.008G112200 Gossypium raimondii HOM05D001978 ORTHO05D003036 6.7e-16 87.4 65 67.7
Nn7g36348 Nelumbo nucifera HOM05D001978 ORTHO05D003036 6.7e-16 87.4 65 66.2
Gohir.A08G055600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.1e-15 86.7 65 67.7
Gohir.D08G064900 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.1e-15 86.7 65 67.7
Gorai.004G067200 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.1e-15 86.7 65 67.7
Medtr4g045577 Medicago truncatula HOM05D001978 ORTHO05D003036 1.1e-15 86.7 64 65.6
Psat6g024720 Pisum sativum HOM05D001978 ORTHO05D003036 1.1e-15 86.7 64 65.6
Psat7g158440 Pisum sativum HOM05D001978 ORTHO05D003036 1.1e-15 86.7 64 65.6
QL04p010499 Quercus lobata HOM05D001978 ORTHO05D003036 1.1e-15 86.7 65 66.2
TPR.G5183 Trifolium pratense HOM05D001978 ORTHO05D003036 1.1e-15 86.7 64 65.6
Carub.0001s1846 Capsella rubella HOM05D001978 ORTHO05D003036 1.5e-15 86.3 65 63.1
CARHR040110 Cardamine hirsuta HOM05D001978 ORTHO05D003036 1.5e-15 86.3 65 63.1
Nn2g15171 Nelumbo nucifera HOM05D001978 ORTHO05D003036 1.5e-15 86.3 65 66.2
Ah.16g100700 Amaranthus hybridus HOM05D001978 ORTHO05D003036 2.0e-15 85.9 65 64.6
Aqoxy2G04178 Aquilegia oxysepala HOM05D001978 ORTHO05D003036 2.0e-15 85.9 65 66.2
Eucgr.G03281 Eucalyptus grandis HOM05D001978 ORTHO05D003036 2.0e-15 85.9 65 66.2
FAN06G2010 Fragaria x ananassa HOM05D001978 ORTHO05D003036 2.0e-15 85.9 88 54.5
Gohir.D08G162400 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.0e-15 85.9 65 67.7
Gorai.004G168700 Gossypium raimondii HOM05D001978 ORTHO05D003036 2.0e-15 85.9 65 67.7
Sed0014499 Sechium edule HOM05D001978 ORTHO05D003036 2.0e-15 85.9 65 66.2
BcaC07g40813 Brassica carinata HOM05D001978 ORTHO05D003036 2.6e-15 85.5 65 64.6
C08p38070 Brassica napus HOM05D001978 ORTHO05D003036 2.6e-15 85.5 65 64.6
BolC8t51381H Brassica oleracea HOM05D001978 ORTHO05D003036 2.6e-15 85.5 65 64.6
Gorai.007G083600 Gossypium raimondii HOM05D001978 ORTHO05D003036 2.6e-15 85.5 65 64.6
QL06p019642 Quercus lobata HOM05D001978 ORTHO05D003036 2.6e-15 85.5 65 66.2
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 2.6e-15 85.5 67 62.7
CARHR291510 Cardamine hirsuta HOM05D001978 ORTHO05D003036 3.3e-15 85.1 65 64.6
Duzib138G1653 Durio zibethinus HOM05D001978 ORTHO05D003036 3.3e-15 85.1 64 68.8
Gohir.A08G141300 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.3e-15 85.1 65 67.7
THA.LOC104823030 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 4.4e-15 84.7 64 65.6
TWI73G0465 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 4.4e-15 84.7 65 64.6
Aa31LG10G17320 Aethionema arabicum HOM05D001978 ORTHO05D003036 5.7e-15 84.3 65 64.6
arahy.Tifrunner.gnm1.ann1.18AW2L Arachis hypogaea HOM05D001978 ORTHO05D003036 5.7e-15 84.3 64 64.1
arahy.Tifrunner.gnm1.ann1.T8W0FC Arachis hypogaea HOM05D001978 ORTHO05D003036 5.7e-15 84.3 64 64.1
A09p55130 Brassica napus HOM05D001978 ORTHO05D003036 5.7e-15 84.3 65 63.1
A09p55140 Brassica napus HOM05D001978 ORTHO05D003036 5.7e-15 84.3 65 63.1
BraA09t40920Z Brassica rapa HOM05D001978 ORTHO05D003036 5.7e-15 84.3 65 63.1
BraA09t40921Z Brassica rapa HOM05D001978 ORTHO05D003036 5.7e-15 84.3 65 63.1
AUR62009427 Chenopodium quinoa HOM05D001978 ORTHO05D003036 5.7e-15 84.3 65 64.6
Ca_26319_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 5.7e-15 84.3 64 64.1
Ca_29948_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 5.7e-15 84.3 64 64.1
Glyma.09G226400 Glycine max HOM05D001978 ORTHO05D003036 5.7e-15 84.3 64 64.1
Glyma.12G010300 Glycine max HOM05D001978 ORTHO05D003036 5.7e-15 84.3 64 64.1
Lalb_Chr01g0000521 Lupinus albus HOM05D001978 ORTHO05D003036 5.7e-15 84.3 64 64.1
Lalb_Chr03g0024131 Lupinus albus HOM05D001978 ORTHO05D003036 5.7e-15 84.3 64 64.1
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 5.7e-15 84.3 64 64.1
TWI09G1049 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 5.7e-15 84.3 65 64.6
TWI53G0392 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 5.7e-15 84.3 65 64.6
VMungo1127G0961 Vigna mungo HOM05D001978 ORTHO05D003036 5.7e-15 84.3 64 64.1
AL5G46320 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 7.4e-15 84.0 65 64.6
AT3G63460 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 7.4e-15 84.0 65 64.6
Carub.0005s3007 Capsella rubella HOM05D001978 ORTHO05D003036 7.4e-15 84.0 65 64.6
ECA248G1610 Erigeron canadensis HOM05D001978 ORTHO05D003036 7.4e-15 84.0 65 63.1
Sp5g00090 Schrenkiella parvula HOM05D001978 ORTHO05D003036 7.4e-15 84.0 65 64.6
BcaB03g12953 Brassica carinata HOM05D001978 ORTHO05D003036 9.7e-15 83.6 85 50.6
Gohir.D11G078201 Gossypium hirsutum HOM05D001978 ORTHO05D003036 9.7e-15 83.6 62 66.1
A08p30170 Brassica napus HOM05D001978 ORTHO05D003036 1.3e-14 83.2 65 63.1
BraA08t34951Z Brassica rapa HOM05D001978 ORTHO05D003036 1.3e-14 83.2 65 63.1
Lj3g0007867 Lotus japonicus HOM05D001978 ORTHO05D003036 1.3e-14 83.2 64 62.5
MSTRG.20555 Avicennia marina HOM05D001978 ORTHO05D003036 1.7e-14 82.8 65 63.1
Lalb_Chr19g0140221 Lupinus albus HOM05D001978 ORTHO05D003036 1.7e-14 82.8 63 63.5
BcaB02g08058 Brassica carinata HOM05D001978 ORTHO05D003036 2.2e-14 82.4 65 63.1
A07p26260 Brassica napus HOM05D001978 ORTHO05D003036 2.2e-14 82.4 65 64.6
C06p28640 Brassica napus HOM05D001978 ORTHO05D003036 2.2e-14 82.4 65 64.6
BolC6t38032H Brassica oleracea HOM05D001978 ORTHO05D003036 2.2e-14 82.4 65 64.6
BraA07t30269Z Brassica rapa HOM05D001978 ORTHO05D003036 2.2e-14 82.4 65 64.6
BcaC08g45262 Brassica carinata HOM05D001978 ORTHO05D003036 2.8e-14 82.0 65 63.1
TPR.G4596 Trifolium pratense HOM05D001978 ORTHO05D003036 2.8e-14 82.0 59 67.8
AT1G18830 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 3.7e-14 81.6 65 58.5
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 3.7e-14 81.6 62 66.1
C04p29860 Brassica napus HOM05D001978 ORTHO05D003036 4.8e-14 81.3 65 61.5
BolC4t24517H Brassica oleracea HOM05D001978 ORTHO05D003036 4.8e-14 81.3 65 61.5
Pp3c1_29660 Physcomitrium patens HOM05D001978 ORTHO05D003036 6.3e-14 80.9 65 58.5
SGA_v2.0_scaffold5G02944 Striga asiatica HOM05D001978 ORTHO05D003036 6.3e-14 80.9 65 66.2
Thhalv10005758m.g Eutrema salsugineum HOM05D001978 ORTHO05D003036 1.1e-13 80.1 65 61.5
DCAR_022370 Daucus carota HOM05D001978 ORTHO05D003036 1.8e-13 79.3 84 53.6
PSO675G4117 Papaver somniferum HOM05D001978 ORTHO05D003036 1.8e-13 79.3 65 61.5
PSO732G0135 Papaver somniferum HOM05D001978 ORTHO05D003036 1.8e-13 79.3 65 61.5
AagrBONN_evm.TU.Sc2ySwM_117.496 Anthoceros agrestis HOM05D001978 ORTHO05D003036 4.1e-13 78.2 65 53.8
Pp3c2_17710 Physcomitrium patens HOM05D001978 ORTHO05D003036 1.2e-12 76.6 65 55.4
SalBow6G7160 Salvia bowleyana HOM05D001978 ORTHO05D003036 1.6e-12 76.3 51 70.6
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 1.7e-11 72.8 64 59.4
CBR_g4546 Chara braunii HOM05D001978 ORTHO05D003036 3.8e-11 71.6 65 53.8
PGR031G1837 Punica granatum HOM05D001978 ORTHO05D003036 3.8e-11 71.6 65 58.5
Mapoly0156s0008 Marchantia polymorpha HOM05D001978 ORTHO05D003036 5.0e-11 71.2 65 52.3
AL1G31350 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 6.5e-11 70.9 75 56.0
Gohir.A11G073600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.2e-10 68.6 75 52.0
MCO15G626 Micromonas commoda HOM05D001978 ORTHO05D003036 1.6e-09 66.2 77 44.2
SMO347G0508 Selaginella moellendorffii HOM05D001978 ORTHO05D003036 1.8e-08 62.8 65 49.2
PRCOL_00000726 Prasinoderma coloniale HOM05D000924 ORTHO05D001209 9.7e-07 57.0 89 39.3
Psat5g216200 Pisum sativum HOM05D001978 ORTHO05D008823 1.3e-06 56.6 45 62.2
Lj7C575G6 Lonicera japonica HOM05D001978 ORTHO05D003036 1.7e-06 56.2 33 75.8


User provided reference genes

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