Gene: AT3G63460

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G63460
  • Transcript Identifier AT3G63460.1
  • Gene Type Coding gene
  • Location Chr3 : 23431009-23437241 : negative

Gene Family Information

  • ID HOM05D001978
  • #Genes/#Species 334/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G63460.1
  • Alias SEC31B
  • uniprot Q8L611

Descriptions

  • Description transducin family protein / WD-40 repeat family protein
  • Computational description transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36264 Blast hits to 25632 proteins in 1258 species: Archae - 42; Bacteria - 5004; Metazoa - 13161; Fungi - 7258; Plants - 4512; Viruses - 551; Other Eukaryotes - 5736 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006888
IEA
Gene Ontologyendoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006888
IEA
InterProendoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0090110
IBA
Gene OntologyCOPII-coated vesicle cargo loading1
GO:0007029
IBA
Gene Ontologyendoplasmic reticulum organization1
GO:0006886
IBA
Gene Ontologyintracellular protein transport1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0005198
IBA
Gene Ontologystructural molecule activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030127
IBA
Gene OntologyCOPII vesicle coat1
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma2
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol3
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0070971
IBA
Gene Ontologyendoplasmic reticulum exit site1
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036322 WD40-repeat-containing domain superfamily
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR040251 Protein transport protein SEC31-like
IPR024298 Ancestral coatomer element 1, Sec16/Sec31
Mapman id Description
22.1.1.1.2 Vesicle trafficking.ER export trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.scaffolding component Sec31