Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb202170 Zea mays HOM05D004181 ORTHO05D005610 2.1e-129 465.7 236 100.0
Zm00001eb216850 Zea mays HOM05D013194 ORTHO05D015061 5.2e-128 461.1 236 99.2
Zm00001eb237010 Zea mays HOM05D001670 ORTHO05D005610 1.5e-111 406.4 227 91.6
Zm00001eb133400 Zea mays HOM05D013194 ORTHO05D015061 1.5e-95 353.2 184 97.3
Zm00001eb333450 Zea mays HOM05D004181 ORTHO05D005610 3.0e-83 312.4 163 96.3
Zm00001eb341280 Zea mays HOM05D004181 ORTHO05D005610 1.1e-82 310.5 159 98.1
Zm00001eb127880 Zea mays HOM05D004181 ORTHO05D005610 1.1e-80 303.9 163 93.3
Os01g0259400 Oryza sativa ssp. japonica HOM05D004181 ORTHO05D005610 1.4e-75 287.0 163 87.7
Zm00001eb093240 Zea mays HOM05D013194 ORTHO05D015061 5.0e-70 268.5 136 100.0
QL06p007241 Quercus lobata HOM05D004181 ORTHO05D005610 4.4e-58 228.8 163 63.2
EL10Ac3g06539 Beta vulgaris HOM05D004181 ORTHO05D005610 1.7e-57 226.9 163 65.0
Hund20614 Selenicereus undatus HOM05D004181 ORTHO05D005610 4.8e-57 225.3 163 63.2
QL12p038326 Quercus lobata HOM05D004181 ORTHO05D005610 9.1e-56 221.1 161 60.9
arahy.Tifrunner.gnm1.ann1.6ZP27B Arachis hypogaea HOM05D004181 ORTHO05D005610 2.0e-55 219.9 163 59.5
VMungo0540G0214 Vigna mungo HOM05D004181 ORTHO05D005610 2.0e-55 219.9 164 59.8
Glyma.13G214400 Glycine max HOM05D004181 ORTHO05D005610 4.5e-55 218.8 163 60.1
TWI09G1497 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 5.9e-55 218.4 163 62.6
CiPaw.01G154000 Carya illinoinensis HOM05D004181 ORTHO05D005610 1.0e-54 217.6 163 60.1
Phvul.006G160500 Phaseolus vulgaris HOM05D004181 ORTHO05D005610 1.3e-54 217.2 163 59.5
LjContig00389g0007799 Lotus japonicus HOM05D004181 ORTHO05D005610 1.7e-54 216.9 159 61.6
TAR633G0339 Trochodendron aralioides HOM05D004181 ORTHO05D005610 2.9e-54 216.1 163 60.1
Ciclev10004155m.g Citrus clementina HOM05D004181 ORTHO05D005610 3.8e-54 215.7 159 62.9
Glyma.15G098800 Glycine max HOM05D004181 ORTHO05D005610 3.8e-54 215.7 159 60.4
Dinv44435 Davidia involucrata HOM05D004181 ORTHO05D005610 5.0e-54 215.3 163 61.3
Duzib151G0672 Durio zibethinus HOM05D004181 ORTHO05D005610 5.0e-54 215.3 163 60.7
Psat1g186920 Pisum sativum HOM05D004181 ORTHO05D005610 6.5e-54 214.9 163 60.1
Thecc.04G276100 Theobroma cacao HOM05D004181 ORTHO05D005610 6.5e-54 214.9 163 62.0
Lalb_Chr18g0055771 Lupinus albus HOM05D004181 ORTHO05D005610 8.5e-54 214.5 163 59.5
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 1.1e-53 214.2 161 59.6
TPR.G1487 Trifolium pratense HOM05D004181 ORTHO05D005610 1.9e-53 213.4 163 59.5
AL6G29980 Arabidopsis lyrata HOM05D004181 ORTHO05D005610 2.5e-53 213.0 161 60.2
Carub.0006s1700 Capsella rubella HOM05D004181 ORTHO05D005610 2.5e-53 213.0 161 60.9
AUR62040385 Chenopodium quinoa HOM05D004181 ORTHO05D005610 2.5e-53 213.0 163 62.6
AUR62040726 Chenopodium quinoa HOM05D004181 ORTHO05D005610 2.5e-53 213.0 163 63.2
Medtr2g020380 Medicago truncatula HOM05D004181 ORTHO05D005610 2.5e-53 213.0 163 58.9
Sp6g25640 Schrenkiella parvula HOM05D004181 ORTHO05D005610 3.2e-53 212.6 161 59.6
AT5G18700 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 4.2e-53 212.2 161 60.2
BolC3t13535H Brassica oleracea HOM05D004181 ORTHO05D005610 7.2e-53 211.5 161 58.4
Thhalv10012450m.g Eutrema salsugineum HOM05D004181 ORTHO05D005610 9.4e-53 211.1 161 58.4
Cpa.g.sc16.105 Carica papaya HOM05D004181 ORTHO05D005610 1.6e-52 210.3 163 60.7
Manes.15G017750 Manihot esculenta HOM05D004181 ORTHO05D005610 1.6e-52 210.3 163 60.1
CARHR194300 Cardamine hirsuta HOM05D004181 ORTHO05D005610 2.7e-52 209.5 161 58.4
MSTRG.21818 Avicennia marina HOM05D004181 ORTHO05D005610 3.6e-52 209.1 163 60.7
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 4.7e-52 208.8 161 57.8
BraA03t10229Z Brassica rapa HOM05D004181 ORTHO05D005610 4.7e-52 208.8 161 57.8
TWI73G0666 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 6.1e-52 208.4 163 60.7
CANSAT78G2156 Cannabis sativa HOM05D004181 ORTHO05D005610 8.0e-52 208.0 161 60.9
Aa31LG11G10920 Aethionema arabicum HOM05D004181 ORTHO05D005610 1.0e-51 207.6 161 58.4
COL.COLO4_13939 Corchorus olitorius HOM05D004181 ORTHO05D005610 1.4e-51 207.2 163 57.7
Aqoxy5G00623 Aquilegia oxysepala HOM05D004181 ORTHO05D005610 2.3e-51 206.5 163 58.9
AT1G33940 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 2.3e-51 206.5 162 58.0
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 3.0e-51 206.1 161 57.8
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 3.0e-51 206.1 161 57.8
BolC9t58645H Brassica oleracea HOM05D004181 ORTHO05D005610 3.0e-51 206.1 161 57.8
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 3.0e-51 206.1 161 57.8
CSS0036329 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 3.0e-51 206.1 163 59.5
Lalb_Chr15g0087081 Lupinus albus HOM05D004181 ORTHO05D005610 3.0e-51 206.1 163 58.3
Nn3g21283 Nelumbo nucifera HOM05D004181 ORTHO05D005610 3.0e-51 206.1 163 58.3
FvH4_4g17050 Fragaria vesca HOM05D004181 ORTHO05D005610 4.0e-51 205.7 166 59.6
FAN12G1830 Fragaria x ananassa HOM05D004181 ORTHO05D005610 4.0e-51 205.7 166 59.6
FAN12G4244 Fragaria x ananassa HOM05D004181 ORTHO05D005610 4.0e-51 205.7 166 59.6
Migut.N00126 Erythranthe guttata HOM05D004181 ORTHO05D005610 6.8e-51 204.9 163 57.1
RcHm_v2.0_Chr4g0420851 Rosa chinensis HOM05D004181 ORTHO05D005610 6.8e-51 204.9 166 60.2
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 2.6e-50 203.0 161 57.1
MD16G1176300 Malus domestica HOM05D004181 ORTHO05D005610 3.4e-50 202.6 163 58.3
Prupe.1G143100 Prunus persica HOM05D004181 ORTHO05D005610 3.4e-50 202.6 163 57.7
CSS0009092 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 4.4e-50 202.2 158 61.4
Sabra08G0148900 Salix brachista HOM05D004181 ORTHO05D005610 4.4e-50 202.2 163 55.8
Manes.03G190400 Manihot esculenta HOM05D004181 ORTHO05D005610 5.7e-50 201.8 163 56.4
FAN17G2769 Fragaria x ananassa HOM05D004181 ORTHO05D005610 9.8e-50 201.1 165 59.4
Gohir.A10G101825 Gossypium hirsutum HOM05D004181 ORTHO05D005610 9.8e-50 201.1 163 57.7
MD13G1174600 Malus domestica HOM05D004181 ORTHO05D005610 1.3e-49 200.7 163 58.3
FAN07G0512 Fragaria x ananassa HOM05D004181 ORTHO05D005610 2.2e-49 199.9 163 59.5
Potri.008G195800 Populus trichocarpa HOM05D004181 ORTHO05D005610 2.8e-49 199.5 162 55.6
Gorai.011G185300 Gossypium raimondii HOM05D004181 ORTHO05D005610 1.1e-48 197.6 163 55.8
Gohir.D02G051700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.4e-48 197.2 163 57.1
Gohir.A02G045700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.8e-48 196.8 163 57.1
CiPaw.02G087200 Carya illinoinensis HOM05D004181 ORTHO05D005610 2.4e-48 196.4 194 47.4
Potri.010G031800 Populus trichocarpa HOM05D004181 ORTHO05D005610 3.1e-48 196.1 163 55.2
Gorai.005G057000 Gossypium raimondii HOM05D004181 ORTHO05D005610 4.1e-48 195.7 163 56.4
Sc13g0003670 Simmondsia chinensis HOM05D004181 ORTHO05D005610 4.1e-48 195.7 164 55.5
MELO3C006602.2 Cucumis melo HOM05D004181 ORTHO05D005610 4.5e-47 192.2 164 55.5
HPP92_025279 Vanilla planifolia HOM05D004181 ORTHO05D005610 4.5e-47 192.2 150 63.3
Cc03_g12380 Coffea canephora HOM05D004181 ORTHO05D005610 5.9e-47 191.8 163 57.1
Sed0020769 Sechium edule HOM05D004181 ORTHO05D005610 5.9e-47 191.8 164 53.7
CsaV3_3G014080 Cucumis sativus L. HOM05D004181 ORTHO05D005610 1.0e-46 191.0 164 54.9
CAN.G2005.1 Capsicum annuum HOM05D004181 ORTHO05D005610 1.7e-46 190.3 163 54.6
Rhsim04G0215600 Rhododendron simsii HOM05D004181 ORTHO05D005610 5.0e-46 188.7 150 60.0
Solyc08g013940.3 Solanum lycopersicum HOM05D004181 ORTHO05D005610 6.5e-46 188.3 163 54.6
Sed0026329 Sechium edule HOM05D004181 ORTHO05D005610 1.5e-45 187.2 164 53.7
Sopen08g004800 Solanum pennellii HOM05D004181 ORTHO05D005610 1.9e-45 186.8 163 54.6
Eucgr.H03714 Eucalyptus grandis HOM05D004181 ORTHO05D005610 9.4e-45 184.5 161 55.9
Peaxi162Scf00058g01114 Petunia axillaris HOM05D004181 ORTHO05D005610 1.2e-44 184.1 163 52.1
ClCG05G005760 Citrullus lanatus HOM05D004181 ORTHO05D005610 1.0e-43 181.0 164 52.4
PSO170G6249 Papaver somniferum HOM05D004181 ORTHO05D005610 1.8e-43 180.3 158 52.5
ECA233G4950 Erigeron canadensis HOM05D004181 ORTHO05D005610 2.3e-43 179.9 163 56.4
SHI00295 Sapria himalayana HOM05D004181 ORTHO05D005610 3.0e-43 179.5 161 55.3
ATR0706G144 Amborella trichopoda HOM05D004181 ORTHO05D005610 1.7e-41 173.7 160 53.8
HanXRQChr13g0414551 Helianthus annuus HOM05D004181 ORTHO05D005610 6.3e-41 171.8 165 52.1
Gohir.D10G165800 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.2e-39 167.5 163 50.3
Lsat_1_v5_gn_6_15980 Lactuca sativa HOM05D004181 ORTHO05D005610 2.0e-39 166.8 168 53.0
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 2.3e-38 163.3 161 49.1
SEGI_19119 Sequoiadendron giganteum HOM05D004181 ORTHO05D005610 5.0e-38 162.2 164 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2942 Anthoceros agrestis HOM05D004181 ORTHO05D005610 1.7e-33 147.1 164 43.9
SMO144G0053 Selaginella moellendorffii HOM05D004181 ORTHO05D005610 4.1e-32 142.5 158 43.7
Pp3c2_16690 Physcomitrium patens HOM05D004181 ORTHO05D005610 1.2e-31 141.0 179 41.3
Mapoly0072s0051 Marchantia polymorpha HOM05D004181 ORTHO05D005610 1.6e-31 140.6 159 44.7
Pp3c14_3850 Physcomitrium patens HOM05D004181 ORTHO05D005610 5.9e-31 138.7 159 43.4
GSVIVG01017819001 Vitis vinifera HOM05D004181 ORTHO05D005610 2.2e-25 120.2 93 58.1
CBR_g38144 Chara braunii HOM05D004181 ORTHO05D005610 5.6e-21 105.5 186 34.9
SGA_v2.0_scaffold299G47726 Striga asiatica HOM05D004181 ORTHO05D005610 4.4e-18 95.9 156 39.1
MCO07G673 Micromonas commoda HOM05D004181 ORTHO05D005610 2.2e-17 93.6 188 34.6
Zm00001eb283330 Zea mays HOM05D001670 ORTHO05D002980 4.9e-17 92.4 45 97.8
Cre14.g612000 Chlamydomonas reinhardtii HOM05D004181 ORTHO05D005610 1.2e-15 87.8 157 35.7
arahy.Tifrunner.gnm1.ann1.7XC003 Arachis hypogaea HOM05D000722 ORTHO05D005610 1.4e-11 74.3 51 58.8
BraA06t23930Z Brassica rapa HOM05D004181 ORTHO05D021060 6.8e-11 72.0 74 50.0
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 2.0e-10 70.5 57 57.9
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 5.8e-10 68.9 200 32.0
Zm00001eb177620 Zea mays HOM05D001670 ORTHO05D002980 2.2e-09 67.0 200 31.5
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 2.2e-09 67.0 200 31.0
Zm00001eb134450 Zea mays HOM05D001670 ORTHO05D010670 8.4e-09 65.1 46 73.9
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 5.4e-08 62.4 62 56.5
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 9.2e-08 61.6 43 72.1
Zm00001eb235140 Zea mays HOM05D001670 ORTHO05D002980 9.2e-08 61.6 41 78.0
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 1.6e-07 60.8 56 58.9
CSS0045045 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 2.1e-07 60.5 57 59.6
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 2.1e-07 60.5 81 46.9
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 2.1e-07 60.5 43 72.1
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.7e-07 60.1 43 67.4
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 3.5e-07 59.7 57 57.9
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 4.6e-07 59.3 57 57.9
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 4.6e-07 59.3 43 72.1
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 6.0e-07 58.9 43 67.4
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 6.0e-07 58.9 57 56.1
Zm00001eb382550 Zea mays HOM05D001670 ORTHO05D002980 6.0e-07 58.9 41 73.2
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 7.8e-07 58.5 43 69.8
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 7.8e-07 58.5 46 60.9
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 7.8e-07 58.5 43 69.8
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 1.3e-06 57.8 62 48.4
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 1.7e-06 57.4 43 65.1
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 1.7e-06 57.4 43 67.4
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.7e-06 57.4 43 65.1
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 2.3e-06 57.0 81 40.7
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 2.3e-06 57.0 43 65.1
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 3.0e-06 56.6 46 60.9
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 3.0e-06 56.6 46 60.9
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 3.0e-06 56.6 73 47.9
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 3.0e-06 56.6 60 55.0
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 3.0e-06 56.6 60 53.3
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 3.0e-06 56.6 43 65.1
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 3.0e-06 56.6 61 49.2
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 3.0e-06 56.6 60 53.3
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 3.0e-06 56.6 43 65.1
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 3.9e-06 56.2 60 51.7
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 3.9e-06 56.2 43 65.1
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 3.9e-06 56.2 60 51.7
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 5.1e-06 55.8 43 65.1
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 5.1e-06 55.8 87 41.4
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 5.1e-06 55.8 87 41.4
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 5.1e-06 55.8 84 45.2
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 5.1e-06 55.8 60 50.0
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 5.1e-06 55.8 43 65.1
Os03g0102333 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 5.1e-06 55.8 46 63.0
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 5.1e-06 55.8 43 65.1
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 5.1e-06 55.8 60 50.0
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 5.1e-06 55.8 60 50.0
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 5.1e-06 55.8 50 56.0
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 6.6e-06 55.5 43 62.8
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 6.6e-06 55.5 43 62.8
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 6.6e-06 55.5 46 58.7
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 6.6e-06 55.5 46 58.7
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 6.6e-06 55.5 46 58.7
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 6.6e-06 55.5 43 65.1
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 6.6e-06 55.5 57 52.6
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 6.6e-06 55.5 50 56.0
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 8.6e-06 55.1 58 53.4
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 8.6e-06 55.1 46 58.7
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 8.6e-06 55.1 43 60.5
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 8.6e-06 55.1 46 58.7
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 8.6e-06 55.1 60 50.0
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 8.6e-06 55.1 58 53.4
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 8.6e-06 55.1 58 53.4


User provided reference genes

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