Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.8e-139 499.2 250 100.0
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 6.0e-58 228.4 201 61.7
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 2.7e-50 203.0 204 56.9
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 7.9e-50 201.4 204 56.4
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.0e-41 174.5 205 48.8
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.0e-41 172.9 204 48.5
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 3.0e-41 172.9 205 48.3
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 1.5e-40 170.6 203 48.8
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 1.5e-40 170.6 204 48.5
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 3.3e-40 169.5 203 47.8
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 7.4e-40 168.3 207 44.9
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 1.3e-39 167.5 205 47.3
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.8e-38 163.7 205 46.8
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 4.1e-38 162.5 205 46.8
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 5.3e-38 162.2 205 46.8
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 6.9e-38 161.8 200 47.0
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 1.5e-37 160.6 202 46.5
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 2.0e-37 160.2 202 46.0
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 4.5e-37 159.1 203 45.3
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 5.9e-37 158.7 205 45.9
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 7.7e-37 158.3 205 45.9
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 7.7e-37 158.3 205 45.9
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 7.7e-37 158.3 201 43.8
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 7.7e-37 158.3 205 45.9
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 7.7e-37 158.3 200 45.0
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 7.7e-37 158.3 202 44.6
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.0e-36 157.9 202 44.6
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.7e-36 157.1 202 45.5
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 2.9e-36 156.4 205 45.4
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 2.9e-36 156.4 202 44.1
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 3.8e-36 156.0 202 45.5
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 5.0e-36 155.6 201 43.3
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 6.5e-36 155.2 205 43.9
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 8.5e-36 154.8 205 43.4
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.1e-35 154.5 201 42.8
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 1.1e-35 154.5 205 44.4
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.1e-35 154.5 201 42.8
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.4e-35 154.1 202 44.6
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.4e-35 154.1 204 44.6
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.4e-35 154.1 204 44.1
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 1.9e-35 153.7 205 42.9
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.9e-35 153.7 203 43.3
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 1.9e-35 153.7 205 43.9
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.9e-35 153.7 203 46.3
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.5e-35 153.3 204 44.6
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 3.2e-35 152.9 205 43.9
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 4.2e-35 152.5 201 42.3
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 5.5e-35 152.1 205 41.5
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 7.2e-35 151.8 201 41.3
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 7.2e-35 151.8 205 41.5
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 9.4e-35 151.4 201 41.8
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 9.4e-35 151.4 205 43.9
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.2e-34 151.0 201 41.8
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.6e-34 150.6 185 44.9
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 2.1e-34 150.2 202 42.1
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 2.1e-34 150.2 202 42.1
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.1e-34 150.2 202 42.1
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 2.1e-34 150.2 202 42.1
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 2.1e-34 150.2 203 42.4
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 2.7e-34 149.8 201 41.8
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 3.6e-34 149.4 202 42.1
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 3.6e-34 149.4 202 42.1
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 3.6e-34 149.4 200 42.0
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 3.6e-34 149.4 207 44.0
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 3.6e-34 149.4 201 41.8
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 4.7e-34 149.1 201 41.8
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 6.1e-34 148.7 177 46.3
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 6.1e-34 148.7 202 41.6
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 6.1e-34 148.7 202 41.6
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 7.9e-34 148.3 212 42.0
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 7.9e-34 148.3 201 41.3
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 1.0e-33 147.9 202 41.6
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.0e-33 147.9 205 43.4
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.0e-33 147.9 201 42.8
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 1.4e-33 147.5 201 40.3
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 1.4e-33 147.5 205 45.4
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 1.4e-33 147.5 205 42.4
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.3e-33 146.7 260 39.2
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 3.0e-33 146.4 205 42.9
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 3.9e-33 146.0 201 40.3
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 5.2e-33 145.6 203 44.3
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 5.2e-33 145.6 204 43.1
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 5.2e-33 145.6 202 41.6
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 5.2e-33 145.6 205 42.4
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 6.7e-33 145.2 205 42.0
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 8.8e-33 144.8 202 41.1
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 8.8e-33 144.8 205 42.9
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 1.1e-32 144.4 205 42.9
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 2.0e-32 143.7 202 42.6
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.6e-32 143.3 202 41.1
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.6e-32 143.3 202 41.1
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 3.3e-32 142.9 202 43.1
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 5.7e-32 142.1 205 42.0
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 7.4e-32 141.7 202 41.6
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 9.7e-32 141.4 202 41.6
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.7e-31 140.6 202 41.6
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 2.2e-31 140.2 202 41.1
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 3.7e-31 139.4 200 41.5
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.4e-30 137.5 203 40.9
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.4e-30 136.7 201 41.8
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 2.4e-30 136.7 202 42.6
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 3.1e-30 136.3 203 40.4
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 9.1e-30 134.8 174 44.8
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 2.6e-29 133.3 209 39.2
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.7e-28 130.6 204 41.2
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 2.9e-28 129.8 243 37.0
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 5.5e-27 125.6 251 35.5
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 1.6e-26 124.0 262 34.0
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 2.7e-26 123.2 178 39.9
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.0e-25 121.3 201 35.3
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.6e-24 116.7 197 36.5
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 2.6e-24 116.7 197 36.5
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 9.7e-24 114.8 228 37.3
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 3.7e-23 112.8 198 35.4
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 3.7e-23 112.8 193 39.9
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 6.3e-23 112.1 176 39.2
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 2.4e-22 110.2 201 35.3
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.4e-22 110.2 130 46.9
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 9.1e-22 108.2 104 55.8
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 4.5e-21 105.9 284 28.2
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.0e-17 94.7 201 32.3
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 2.8e-15 86.7 198 31.8
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 4.8e-15 85.9 77 55.8
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 7.0e-14 82.0 104 49.0
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.6e-13 80.9 66 60.6
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.9e-12 76.6 105 36.2
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 3.8e-12 76.3 147 34.0
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 5.5e-11 72.4 105 42.9
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 2.1e-10 70.5 50 62.0
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 7.5e-08 62.0 106 35.8
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 7.5e-08 62.0 61 49.2
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 8.3e-07 58.5 141 33.3


User provided reference genes

Program Settings