Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb192280 Zea mays HOM05D000361 ORTHO05D008498 6.7e-90 334.0 165 100.0
Zm00001eb257900 Zea mays HOM05D000361 ORTHO05D008498 3.5e-86 321.6 162 98.1
Os02g0797400 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D008498 6.5e-85 317.4 160 96.2
HPP92_010438 Vanilla planifolia HOM05D000361 ORTHO05D008498 1.0e-77 293.5 160 87.5
TAR625G0680 Trochodendron aralioides HOM05D000361 ORTHO05D008498 6.5e-77 290.8 162 84.0
CsaV3_2G003500 Cucumis sativus L. HOM05D000361 ORTHO05D008498 4.7e-75 284.6 162 85.2
Phvul.003G175800 Phaseolus vulgaris HOM05D000361 ORTHO05D008498 6.1e-75 284.3 160 83.8
MELO3C004448.2 Cucumis melo HOM05D000361 ORTHO05D008498 8.0e-75 283.9 162 85.2
CiPaw.15G171000 Carya illinoinensis HOM05D000361 ORTHO05D008498 1.8e-74 282.7 162 82.7
Nn8g39756 Nelumbo nucifera HOM05D000361 ORTHO05D008498 1.8e-74 282.7 162 80.9
GSVIVG01001046001 Vitis vinifera HOM05D000361 ORTHO05D008498 2.3e-74 282.3 162 81.5
MSTRG.26309 Avicennia marina HOM05D000361 ORTHO05D008498 8.8e-74 280.4 162 80.9
Psat4g032920 Pisum sativum HOM05D000361 ORTHO05D008498 8.8e-74 280.4 162 81.5
CDE12G0216 Ceratophyllum demersum HOM05D000361 ORTHO05D008498 1.2e-73 280.0 162 80.9
ClCG11G003620 Citrullus lanatus HOM05D000361 ORTHO05D008498 1.2e-73 280.0 162 83.3
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 1.5e-73 279.6 162 80.9
Medtr4g116870 Medicago truncatula HOM05D000361 ORTHO05D008498 2.0e-73 279.3 162 80.9
CANSAT11G1655 Cannabis sativa HOM05D000361 ORTHO05D008498 2.6e-73 278.9 162 80.9
TPR.G15812 Trifolium pratense HOM05D000361 ORTHO05D008498 2.6e-73 278.9 162 80.2
Thecc.09G036800 Theobroma cacao HOM05D000361 ORTHO05D008498 3.4e-73 278.5 162 82.1
VMungo1215G2534 Vigna mungo HOM05D000361 ORTHO05D008498 4.4e-73 278.1 162 80.2
Duzib168G1075 Durio zibethinus HOM05D000361 ORTHO05D008498 5.7e-73 277.7 162 81.5
CSS0046490 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D008498 9.8e-73 276.9 162 80.9
Ca_21604_v3 Cicer arietinum L. HOM05D000361 ORTHO05D008498 9.8e-73 276.9 162 78.4
Gohir.A13G185700 Gossypium hirsutum HOM05D000361 ORTHO05D008498 9.8e-73 276.9 162 81.5
COL.COLO4_18724 Corchorus olitorius HOM05D000361 ORTHO05D008498 1.7e-72 276.2 162 82.1
DCAR_014827 Daucus carota HOM05D000361 ORTHO05D008498 1.7e-72 276.2 162 80.2
Glyma.13G156400 Glycine max HOM05D000361 ORTHO05D008498 1.7e-72 276.2 162 79.6
Gohir.D13G192200 Gossypium hirsutum HOM05D000361 ORTHO05D008498 1.7e-72 276.2 162 80.9
Gorai.013G218100 Gossypium raimondii HOM05D000361 ORTHO05D008498 1.7e-72 276.2 162 80.9
vmacro21875 Vaccinium macrocarpon HOM05D000361 ORTHO05D008498 1.7e-72 276.2 162 81.5
SGA_v2.0_scaffold229G43357 Striga asiatica HOM05D000361 ORTHO05D008498 2.2e-72 275.8 162 79.0
Lj4g0004865 Lotus japonicus HOM05D000361 ORTHO05D008498 2.8e-72 275.4 162 79.6
QL02p091753 Quercus lobata HOM05D000361 ORTHO05D008498 2.8e-72 275.4 162 81.5
BcaC01g03150 Brassica carinata HOM05D000361 ORTHO05D008498 3.7e-72 275.0 162 80.9
A03p44710 Brassica napus HOM05D000361 ORTHO05D008498 3.7e-72 275.0 162 80.9
C03p55560 Brassica napus HOM05D000361 ORTHO05D008498 3.7e-72 275.0 162 80.9
BolC3t17833H Brassica oleracea HOM05D000361 ORTHO05D008498 3.7e-72 275.0 162 80.9
BraA03t13606Z Brassica rapa HOM05D000361 ORTHO05D008498 3.7e-72 275.0 162 80.9
Eucgr.C00405 Eucalyptus grandis HOM05D000361 ORTHO05D008498 3.7e-72 275.0 162 81.5
Glyma.17G104000 Glycine max HOM05D000361 ORTHO05D008498 3.7e-72 275.0 162 79.0
Sc18g0007590 Simmondsia chinensis HOM05D000361 ORTHO05D008498 3.7e-72 275.0 162 81.5
SGA_v2.0_scaffold45G17059 Striga asiatica HOM05D000361 ORTHO05D008498 3.7e-72 275.0 162 79.6
Rhsim01G0049000 Rhododendron simsii HOM05D007151 ORTHO05D008498 6.3e-72 274.2 162 80.2
FvH4_1g01490 Fragaria vesca HOM05D000361 ORTHO05D008498 8.3e-72 273.9 162 79.0
FAN19G0984 Fragaria x ananassa HOM05D000361 ORTHO05D008498 8.3e-72 273.9 162 79.0
FAN26G0198 Fragaria x ananassa HOM05D000361 ORTHO05D008498 8.3e-72 273.9 162 79.0
FAN28G2637 Fragaria x ananassa HOM05D000361 ORTHO05D008498 8.3e-72 273.9 162 79.0
RcHm_v2.0_Chr2g0086411 Rosa chinensis HOM05D000361 ORTHO05D008498 8.3e-72 273.9 162 79.0
Hund21617 Selenicereus undatus HOM05D000361 ORTHO05D008498 8.3e-72 273.9 162 79.6
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 1.4e-71 273.1 160 78.8
AL3G44220 Arabidopsis lyrata HOM05D000361 ORTHO05D008498 1.8e-71 272.7 162 79.6
Dinv23299 Davidia involucrata HOM05D000361 ORTHO05D008498 1.8e-71 272.7 162 79.6
Sed0027129 Sechium edule HOM05D000361 ORTHO05D008498 1.8e-71 272.7 162 80.2
CAN.G520.36 Capsicum annuum HOM05D000361 ORTHO05D008498 2.4e-71 272.3 162 78.4
ATR0629G127 Amborella trichopoda HOM05D000361 ORTHO05D008498 3.1e-71 271.9 159 80.5
THA.LOC104808931 Tarenaya hassleriana HOM05D000361 ORTHO05D008498 3.1e-71 271.9 162 79.6
EL10Ac8g18836 Beta vulgaris HOM05D000361 ORTHO05D008498 4.1e-71 271.6 160 79.4
MD02G1011900 Malus domestica HOM05D000361 ORTHO05D008498 4.1e-71 271.6 162 79.0
MD15G1157500 Malus domestica HOM05D000361 ORTHO05D008498 4.1e-71 271.6 162 79.0
Sp3g25380 Schrenkiella parvula HOM05D000361 ORTHO05D008498 4.1e-71 271.6 162 79.6
EL10Ac8g18833 Beta vulgaris HOM05D000361 ORTHO05D008498 5.4e-71 271.2 160 78.8
Prupe.7G252700 Prunus persica HOM05D000361 ORTHO05D008498 5.4e-71 271.2 162 79.6
Lalb_Chr07g0179611 Lupinus albus HOM05D000361 ORTHO05D008498 7.0e-71 270.8 162 79.0
Nitab4.5_0000416g0090 Nicotiana tabacum HOM05D000361 ORTHO05D008498 7.0e-71 270.8 162 78.4
Potri.006G188700 Populus trichocarpa HOM05D000361 ORTHO05D008498 7.0e-71 270.8 162 80.2
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 9.2e-71 270.4 160 78.8
Lj7A452G24 Lonicera japonica HOM05D000361 ORTHO05D008498 9.2e-71 270.4 162 80.2
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 1.2e-70 270.0 162 78.4
AT2G07690 Arabidopsis thaliana HOM05D000361 ORTHO05D008498 1.6e-70 269.6 162 79.0
CARHR104070 Cardamine hirsuta HOM05D000361 ORTHO05D008498 1.6e-70 269.6 162 78.4
TWI63G1788 Tripterygium wilfordii HOM05D000361 ORTHO05D008498 1.6e-70 269.6 155 81.3
Aqoxy1G00614 Aquilegia oxysepala HOM05D000361 ORTHO05D008498 2.0e-70 269.2 162 80.9
Potri.018G112800 Populus trichocarpa HOM05D000361 ORTHO05D008498 2.7e-70 268.9 162 78.4
SEGI_11719 Sequoiadendron giganteum HOM05D000361 ORTHO05D008498 2.7e-70 268.9 162 75.3
Peaxi162Scf00347g00329 Petunia axillaris HOM05D000361 ORTHO05D008498 3.5e-70 268.5 162 77.8
Solyc07g005020.3 Solanum lycopersicum HOM05D000361 ORTHO05D008498 3.5e-70 268.5 162 77.2
Hma1.2p1_0028F.1_g017220 Hydrangea macrophylla HOM05D000361 ORTHO05D008498 4.5e-70 268.1 162 77.8
Manes.06G040400 Manihot esculenta HOM05D000361 ORTHO05D008498 4.5e-70 268.1 162 78.4
Sabra18G0095900 Salix brachista HOM05D000361 ORTHO05D008498 4.5e-70 268.1 162 79.0
Cc06_g23450 Coffea canephora HOM05D000361 ORTHO05D008498 5.9e-70 267.7 162 76.5
Nitab4.5_0010178g0020 Nicotiana tabacum HOM05D000361 ORTHO05D008498 1.0e-69 266.9 162 77.2
Sopen07g001130 Solanum pennellii HOM05D000361 ORTHO05D008498 1.3e-69 266.5 162 76.5
PGSC0003DMG400011837 Solanum tuberosum HOM05D000361 ORTHO05D008498 1.3e-69 266.5 162 76.5
Lsat_1_v5_gn_8_60021 Lactuca sativa HOM05D000361 ORTHO05D008498 1.7e-69 266.2 162 79.0
PGR142G3728 Punica granatum HOM05D000361 ORTHO05D008498 1.7e-69 266.2 162 78.4
Thhalv10022493m.g Eutrema salsugineum HOM05D000361 ORTHO05D008498 2.3e-69 265.8 162 78.4
Atru.chr7.190 Acer truncatum HOM05D000361 ORTHO05D008498 3.8e-69 265.0 162 79.0
Aa31sc130G100 Aethionema arabicum HOM05D000361 ORTHO05D008498 3.8e-69 265.0 162 78.4
HanXRQChr05g0141521 Helianthus annuus HOM05D000361 ORTHO05D008498 5.0e-69 264.6 160 78.1
ECA236G1460 Erigeron canadensis HOM05D000361 ORTHO05D008498 6.6e-69 264.2 160 78.8
Oeu028794.1 Olea europaea HOM05D000361 ORTHO05D008498 6.6e-69 264.2 162 77.2
Migut.K00361 Erythranthe guttata HOM05D000361 ORTHO05D008498 8.6e-69 263.8 162 75.9
Ciclev10007588m.g Citrus clementina HOM05D000361 ORTHO05D008498 2.5e-68 262.3 161 77.6
PSO339G2602 Papaver somniferum HOM05D000361 ORTHO05D008498 1.6e-67 259.6 163 74.2
PSO384G4385 Papaver somniferum HOM05D000361 ORTHO05D008498 1.6e-67 259.6 163 73.6
unitig_62.g23480 Utricularia gibba HOM05D000361 ORTHO05D008498 3.6e-67 258.5 160 76.9
PSO493G0003 Papaver somniferum HOM05D000361 ORTHO05D008498 8.0e-67 257.3 163 73.6
Haze_19294 Corylus avellana HOM05D000361 ORTHO05D008498 1.5e-65 253.1 162 76.5
Mapoly0006s0287 Marchantia polymorpha HOM05D000361 ORTHO05D008498 2.6e-65 252.3 159 74.8
arahy.Tifrunner.gnm1.ann1.R3IAX4 Arachis hypogaea HOM05D000361 ORTHO05D008498 1.3e-64 250.0 154 75.3
arahy.Tifrunner.gnm1.ann1.YFDY0T Arachis hypogaea HOM05D000361 ORTHO05D008498 1.3e-64 250.0 152 76.3
Ah.14g078530 Amaranthus hybridus HOM05D000361 ORTHO05D008498 6.4e-64 247.7 136 83.8
Pp3c1_32870 Physcomitrium patens HOM05D000361 ORTHO05D008498 8.3e-64 247.3 159 73.6
SMO340G0120 Selaginella moellendorffii HOM05D000361 ORTHO05D008498 5.4e-63 244.6 158 70.3
Oeu030167.1 Olea europaea HOM05D000361 ORTHO05D008498 3.5e-62 241.9 171 71.3
AagrBONN_evm.TU.Sc2ySwM_368.335 Anthoceros agrestis HOM05D000361 ORTHO05D008498 5.9e-62 241.1 159 69.8
Gohir.A05G050000 Gossypium hirsutum HOM05D000361 ORTHO05D008498 5.2e-58 228.0 155 73.5
CBR_g37700 Chara braunii HOM05D000361 ORTHO05D008498 3.9e-53 211.8 162 63.6
Lj7A453G68 Lonicera japonica HOM05D000361 ORTHO05D008498 6.4e-48 194.5 124 75.0
PRCOL_00002108 Prasinoderma coloniale HOM05D000361 ORTHO05D008498 6.0e-38 161.4 153 52.9
MCO13G108 Micromonas commoda HOM05D000361 ORTHO05D008498 2.4e-34 149.4 157 48.4
AUR62011272 Chenopodium quinoa HOM05D000361 ORTHO05D008498 9.9e-33 144.1 160 48.8
Cre01.g023150 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D008498 3.2e-31 139.0 160 44.4
Haze_26382 Corylus avellana HOM05D000361 ORTHO05D008498 5.8e-25 118.2 158 39.2
Carub.0013s0016 Capsella rubella HOM05D000361 ORTHO05D008498 1.7e-24 116.7 65 84.6
CiPaw.09G219800 Carya illinoinensis HOM05D000361 ORTHO05D008498 1.5e-20 103.6 71 71.8
COL.COLO4_18723 Corchorus olitorius HOM05D000361 ORTHO05D161881 1.6e-11 73.6 38 81.6
Sp3g07990 Schrenkiella parvula HOM05D000361 ORTHO05D007806 6.5e-08 61.6 142 28.2
A05p39400 Brassica napus HOM05D000361 ORTHO05D007806 8.4e-08 61.2 142 28.9
BolC5t34495H Brassica oleracea HOM05D000361 ORTHO05D007806 8.4e-08 61.2 142 28.9
BraA05t22721Z Brassica rapa HOM05D000361 ORTHO05D007806 8.4e-08 61.2 142 28.9
Carub.0003s0875 Capsella rubella HOM05D000361 ORTHO05D007806 1.9e-07 60.1 142 28.2
BcaC05g29691 Brassica carinata HOM05D000361 ORTHO05D007806 3.2e-07 59.3 142 28.2
AL3G20870 Arabidopsis lyrata HOM05D000361 ORTHO05D007806 5.5e-07 58.5 142 28.2
C05p58430 Brassica napus HOM05D000361 ORTHO05D007806 5.5e-07 58.5 142 28.9
MCO01G199 Micromonas commoda HOM05D000361 ORTHO05D007313 1.2e-06 57.4 157 28.0
THA.LOC104816318 Tarenaya hassleriana HOM05D000361 ORTHO05D007806 1.2e-06 57.4 142 26.1
Aa31LG3G2080 Aethionema arabicum HOM05D000361 ORTHO05D007806 1.6e-06 57.0 142 27.5
Aqoxy6G02433 Aquilegia oxysepala HOM05D000361 ORTHO05D008094 2.7e-06 56.2 147 26.5
AT3G09660 Arabidopsis thaliana HOM05D000361 ORTHO05D007806 2.7e-06 56.2 142 27.5
QL07p045302 Quercus lobata HOM05D000361 ORTHO05D007806 3.5e-06 55.8 144 27.1
Haze_26393 Corylus avellana HOM05D000361 ORTHO05D005006 4.6e-06 55.5 134 30.6
AUR62024658 Chenopodium quinoa HOM05D000361 ORTHO05D005006 6.0e-06 55.1 163 28.2
Duzib132G0299 Durio zibethinus HOM05D000361 ORTHO05D008094 6.0e-06 55.1 146 24.7
Cfa017506 Carpinus fangiana HOM05D000361 ORTHO05D007806 7.9e-06 54.7 144 27.1
CsaV3_3G035520 Cucumis sativus L. HOM05D000361 ORTHO05D007806 7.9e-06 54.7 142 26.8
TAR636G2453 Trochodendron aralioides HOM05D000361 ORTHO05D005006 7.9e-06 54.7 156 29.5


User provided reference genes

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