Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 8.9e-62 240.0 111 100.0
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 3.1e-46 188.3 111 73.9
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 1.3e-39 166.4 111 64.9
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 9.3e-35 150.2 113 61.1
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 7.4e-32 140.6 111 60.4
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 2.1e-31 139.0 113 60.2
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 3.7e-31 138.3 113 59.3
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 8.1e-31 137.1 113 57.5
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 4.5e-29 131.3 113 58.4
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 7.6e-29 130.6 113 54.9
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.9e-28 128.6 111 50.5
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 6.4e-28 127.5 113 55.8
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 1.4e-27 126.3 113 54.0
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 1.4e-27 126.3 113 54.0
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 1.4e-27 126.3 113 54.0
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 1.9e-27 125.9 113 54.9
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 2.4e-27 125.6 113 54.9
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 3.2e-27 125.2 109 48.6
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 3.2e-27 125.2 113 53.1
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 54.0
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 52.2
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 52.2
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 9.3e-27 123.6 113 51.3
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 9.3e-27 123.6 113 51.3
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 1.2e-26 123.2 113 50.4
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 2.7e-26 122.1 113 53.1
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 2.7e-26 122.1 113 53.1
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 4.6e-26 121.3 113 51.3
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 7.9e-26 120.6 113 53.1
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 7.9e-26 120.6 113 53.1
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 7.9e-26 120.6 114 53.5
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 1.3e-25 119.8 111 50.5
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 1.3e-25 119.8 113 52.2
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-25 119.8 113 50.4
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-25 119.8 113 50.4
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-25 119.8 113 50.4
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.3e-25 119.8 113 50.4
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 1.3e-25 119.8 113 51.3
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 1.8e-25 119.4 113 50.4
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 2.3e-25 119.0 111 51.4
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.3e-25 119.0 113 51.3
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 3.0e-25 118.6 113 51.3
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 3.0e-25 118.6 113 48.7
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 5.1e-25 117.9 113 51.3
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 5.1e-25 117.9 113 51.3
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 8.7e-25 117.1 113 51.3
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 1.1e-24 116.7 111 51.4
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.5e-24 116.3 113 50.4
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 1.9e-24 115.9 111 48.6
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.5e-24 115.5 113 50.4
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 2.5e-24 115.5 113 48.7
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 3.3e-24 115.2 111 46.8
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 4.3e-24 114.8 113 50.4
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 5.6e-24 114.4 113 51.3
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 7.4e-24 114.0 113 50.4
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 9.6e-24 113.6 111 49.5
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 9.6e-24 113.6 113 51.3
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 9.6e-24 113.6 113 47.8
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 1.3e-23 113.2 111 47.7
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 1.3e-23 113.2 113 50.4
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 1.3e-23 113.2 113 50.4
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 2.1e-23 112.5 95 57.9
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 4.8e-23 111.3 113 48.7
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 8.2e-23 110.5 113 49.6
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 8.2e-23 110.5 115 48.7
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 1.1e-22 110.2 109 45.0
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.1e-22 110.2 111 45.9
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.8e-22 109.4 113 51.3
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 2.4e-22 109.0 111 47.7
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 3.1e-22 108.6 113 50.4
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 3.1e-22 108.6 114 52.6
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 5.3e-22 107.8 113 51.3
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 5.3e-22 107.8 109 43.1
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 6.9e-22 107.5 113 50.4
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 1.2e-21 106.7 117 41.9
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 1.2e-21 106.7 113 48.7
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 2.0e-21 105.9 113 50.4
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 2.6e-21 105.5 109 49.5
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 2.6e-21 105.5 113 48.7
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 3.4e-21 105.1 113 48.7
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 3.4e-21 105.1 113 48.7
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 3.4e-21 105.1 114 51.8
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 3.4e-21 105.1 111 45.0
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 5.8e-21 104.4 98 52.0
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 7.6e-21 104.0 89 51.7
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 1.0e-20 103.6 109 46.8
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-20 103.6 109 46.8
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-20 103.6 109 46.8
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-20 103.6 109 46.8
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-20 103.6 109 46.8
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-20 103.6 109 46.8
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-20 103.6 109 46.8
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 1.0e-20 103.6 100 51.0
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 1.0e-20 103.6 109 47.7
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 1.3e-20 103.2 113 48.7
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 2.2e-20 102.4 115 41.7
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 2.2e-20 102.4 113 48.7
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 6.5e-20 100.9 113 46.0
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 1.1e-19 100.1 113 44.2
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.1e-19 100.1 114 47.4
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 1.4e-19 99.8 113 46.0
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 1.4e-19 99.8 113 46.0
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 1.4e-19 99.8 113 46.0
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 1.4e-19 99.8 113 46.0
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 1.4e-19 99.8 113 46.0
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 1.4e-19 99.8 113 46.0
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 1.4e-19 99.8 113 46.0
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 1.4e-19 99.8 113 46.0
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 1.9e-19 99.4 113 46.0
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 3.2e-19 98.6 111 42.3
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 5.5e-19 97.8 107 42.1
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 1.2e-18 96.7 113 45.1
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 1.2e-18 96.7 109 45.9
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 2.1e-18 95.9 113 45.1
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 1.5e-16 89.7 106 50.0
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 7.4e-16 87.4 74 56.8
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 1.6e-15 86.3 113 46.9
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 3.7e-15 85.1 97 44.3
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 6.3e-15 84.3 71 50.7
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 3.4e-13 78.6 128 34.4
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 3.4e-13 78.6 73 54.8
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 5.9e-13 77.8 79 48.1
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 3.8e-12 75.1 87 44.8
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.6e-10 69.7 66 54.5
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 2.7e-10 68.9 105 38.1
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 1.4e-09 66.6 66 50.0
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 1.4e-09 66.6 68 51.5
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 8.8e-09 63.9 56 55.4
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 9.7e-08 60.5 65 47.7
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.7e-07 59.7 115 33.9
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 6.3e-07 57.8 66 50.0
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 2.4e-06 55.8 115 32.2
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 3.1e-06 55.5 115 33.0
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 5.3e-06 54.7 115 31.3
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 5.3e-06 54.7 114 29.8
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 5.3e-06 54.7 115 32.2
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 9.1e-06 53.9 115 32.2
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 9.1e-06 53.9 115 32.2
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 9.1e-06 53.9 115 33.0


User provided reference genes

Program Settings