Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb185150 Zea mays HOM05D001296 ORTHO05D442082 2.0e-36 155.2 75 100.0
Zm00001eb369320 Zea mays HOM05D001296 ORTHO05D002609 4.1e-10 67.8 38 89.5
CDE02G1716 Ceratophyllum demersum HOM05D001296 ORTHO05D002609 1.2e-09 66.2 38 84.2
CDE02G4307 Ceratophyllum demersum HOM05D001296 ORTHO05D002609 1.2e-09 66.2 38 84.2
CANSAT54G0277 Cannabis sativa HOM05D001296 ORTHO05D002609 2.0e-09 65.5 38 84.2
CiPaw.02G018700 Carya illinoinensis HOM05D001296 ORTHO05D002609 2.0e-09 65.5 38 84.2
CiPaw.03G228100 Carya illinoinensis HOM05D001296 ORTHO05D002609 2.0e-09 65.5 38 84.2
FvH4_7g09301 Fragaria vesca HOM05D001296 ORTHO05D002609 2.7e-09 65.1 38 81.6
FAN01G0624 Fragaria x ananassa HOM05D001296 ORTHO05D002609 2.7e-09 65.1 38 81.6
FAN03G1825 Fragaria x ananassa HOM05D001296 ORTHO05D002609 2.7e-09 65.1 38 81.6
FAN06G0279 Fragaria x ananassa HOM05D001296 ORTHO05D002609 2.7e-09 65.1 38 81.6
FAN06G0813 Fragaria x ananassa HOM05D001296 ORTHO05D002609 2.7e-09 65.1 38 81.6
FAN10G2632 Fragaria x ananassa HOM05D001296 ORTHO05D002609 2.7e-09 65.1 38 81.6
FAN10G3705 Fragaria x ananassa HOM05D001296 ORTHO05D002609 2.7e-09 65.1 38 81.6
MD02G1080800 Malus domestica HOM05D001296 ORTHO05D002609 2.7e-09 65.1 38 81.6
RcHm_v2.0_Chr1g0332791 Rosa chinensis HOM05D001296 ORTHO05D002609 2.7e-09 65.1 38 81.6
Os01g0805800 Oryza sativa ssp. japonica HOM05D001296 ORTHO05D002609 3.5e-09 64.7 38 84.2
Aqoxy2G01156 Aquilegia oxysepala HOM05D001296 ORTHO05D002609 4.5e-09 64.3 38 81.6
Carub.0003s2249 Capsella rubella HOM05D001296 ORTHO05D002609 4.5e-09 64.3 38 81.6
Nn7g37941 Nelumbo nucifera HOM05D001296 ORTHO05D002609 4.5e-09 64.3 38 81.6
Aqoxy7G02899 Aquilegia oxysepala HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
AL3G36600 Arabidopsis lyrata HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
AT3G22320 Arabidopsis thaliana HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
BcaB04g19197 Brassica carinata HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
BcaC01g03451 Brassica carinata HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
BcaC05g28081 Brassica carinata HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
A03p42720 Brassica napus HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
A05p26450 Brassica napus HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
C03p52440 Brassica napus HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
C05p41040 Brassica napus HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
BolC3t17514H Brassica oleracea HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
BolC5t32846H Brassica oleracea HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
BraA03t13419Z Brassica rapa HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
BraA05t21518Z Brassica rapa HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
CARHR098220 Cardamine hirsuta HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
ClCG09G007940 Citrullus lanatus HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 78.9
Thhalv10021534m.g Eutrema salsugineum HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
FvH4_5g21560 Fragaria vesca HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 78.9
FAN04G3198 Fragaria x ananassa HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 78.9
MBI19_g18423_MAGBIO Magnolia biondii HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
Sp3g20110 Schrenkiella parvula HOM05D001296 ORTHO05D002609 5.9e-09 63.9 38 81.6
ATR0737G047 Amborella trichopoda HOM05D001296 ORTHO05D002609 7.7e-09 63.5 38 81.6
Ciclev10009504m.g Citrus clementina HOM05D001296 ORTHO05D002609 7.7e-09 63.5 38 78.9
ECA234G0562 Erigeron canadensis HOM05D001296 ORTHO05D002609 7.7e-09 63.5 38 76.3
Migut.C00444 Erythranthe guttata HOM05D001296 ORTHO05D002609 7.7e-09 63.5 38 84.2
MD02G1093900 Malus domestica HOM05D001296 ORTHO05D002609 7.7e-09 63.5 39 76.9
Potri.006G161600 Populus trichocarpa HOM05D001296 ORTHO05D002609 7.7e-09 63.5 38 78.9
Sabra06G0124700 Salix brachista HOM05D001296 ORTHO05D002609 7.7e-09 63.5 38 78.9
HPP92_016048 Vanilla planifolia HOM05D001296 ORTHO05D002609 7.7e-09 63.5 39 79.5
Atru.chr6.1322 Acer truncatum HOM05D001296 ORTHO05D002609 1.0e-08 63.2 38 76.3
Manes.16G112700 Manihot esculenta HOM05D001296 ORTHO05D002609 1.0e-08 63.2 38 78.9
PSO541G5648 Papaver somniferum HOM05D001296 ORTHO05D002609 1.0e-08 63.2 38 81.6
PSO675G8660 Papaver somniferum HOM05D001296 ORTHO05D002609 1.0e-08 63.2 38 81.6
SEGI_05608 Sequoiadendron giganteum HOM05D001296 ORTHO05D002609 1.0e-08 63.2 38 78.9
GSVIVG01015349001 Vitis vinifera HOM05D001296 ORTHO05D002609 1.0e-08 63.2 38 78.9
CSS0015641 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D002609 1.3e-08 62.8 38 76.3
MELO3C015712.2 Cucumis melo HOM05D001296 ORTHO05D002609 1.3e-08 62.8 38 76.3
HanXRQChr05g0138911 Helianthus annuus HOM05D001296 ORTHO05D002609 1.3e-08 62.8 38 76.3
PGR102G1593 Punica granatum HOM05D001296 ORTHO05D002609 1.3e-08 62.8 38 78.9
QL02p103687 Quercus lobata HOM05D001296 ORTHO05D002609 1.3e-08 62.8 38 78.9
QL07p038125 Quercus lobata HOM05D001296 ORTHO05D002609 1.3e-08 62.8 38 78.9
TAR628G1577 Trochodendron aralioides HOM05D001296 ORTHO05D002609 1.3e-08 62.8 38 78.9
BcaB06g26336 Brassica carinata HOM05D001296 ORTHO05D002609 1.7e-08 62.4 38 76.3
FAN03G1092 Fragaria x ananassa HOM05D001296 ORTHO05D002609 1.7e-08 62.4 38 78.9
Lj9A449T50 Lonicera japonica HOM05D001296 ORTHO05D002609 1.7e-08 62.4 38 73.7
TAR381G0564 Trochodendron aralioides HOM05D001296 ORTHO05D002609 1.7e-08 62.4 38 78.9
Aa31LG8G8890 Aethionema arabicum HOM05D001296 ORTHO05D002609 2.2e-08 62.0 38 78.9
Cfa001700 Carpinus fangiana HOM05D001296 ORTHO05D002609 2.2e-08 62.0 38 81.6
Cfa005770 Carpinus fangiana HOM05D001296 ORTHO05D002609 2.2e-08 62.0 38 81.6
Haze_16834 Corylus avellana HOM05D001296 ORTHO05D002609 2.2e-08 62.0 38 81.6
Eucgr.C01278 Eucalyptus grandis HOM05D001296 ORTHO05D002609 2.2e-08 62.0 38 76.3
Rhsim01G0122100 Rhododendron simsii HOM05D001296 ORTHO05D002609 2.2e-08 62.0 38 76.3
Rhsim10G0003200 Rhododendron simsii HOM05D001296 ORTHO05D002609 2.2e-08 62.0 38 76.3
vmacro16529 Vaccinium macrocarpon HOM05D001296 ORTHO05D002609 2.2e-08 62.0 38 76.3
AagrBONN_evm.TU.Sc2ySwM_368.2216 Anthoceros agrestis HOM05D001296 ORTHO05D002609 2.9e-08 61.6 38 76.3
DCAR_012060 Daucus carota HOM05D001296 ORTHO05D002609 2.9e-08 61.6 38 76.3
Dinv36671 Davidia involucrata HOM05D001296 ORTHO05D002609 2.9e-08 61.6 38 73.7
Prupe.2G121400 Prunus persica HOM05D001296 ORTHO05D002609 2.9e-08 61.6 38 78.9
Sed0010540 Sechium edule HOM05D001296 ORTHO05D002609 2.9e-08 61.6 38 73.7
Atru.chr7.1387 Acer truncatum HOM05D001296 ORTHO05D002609 3.8e-08 61.2 38 73.7
MSTRG.1488 Avicennia marina HOM05D001296 ORTHO05D002609 3.8e-08 61.2 38 78.9
COL.COLO4_34810 Corchorus olitorius HOM05D001296 ORTHO05D002609 3.8e-08 61.2 38 73.7
MELO3C021758.2 Cucumis melo HOM05D001296 ORTHO05D002609 3.8e-08 61.2 38 71.1
Dinv41638 Davidia involucrata HOM05D001296 ORTHO05D002609 3.8e-08 61.2 38 71.1
Duzib150G0179 Durio zibethinus HOM05D001296 ORTHO05D002609 3.8e-08 61.2 38 73.7
Gohir.A08G242000 Gossypium hirsutum HOM05D001296 ORTHO05D002609 3.8e-08 61.2 38 73.7
Gohir.D08G262800 Gossypium hirsutum HOM05D001296 ORTHO05D002609 3.8e-08 61.2 38 73.7
Gorai.004G280900 Gossypium raimondii HOM05D001296 ORTHO05D002609 3.8e-08 61.2 38 73.7
HanXRQChr04g0103651 Helianthus annuus HOM05D001296 ORTHO05D002609 3.8e-08 61.2 38 73.7
RcHm_v2.0_Chr1g0345801 Rosa chinensis HOM05D001296 ORTHO05D002609 3.8e-08 61.2 38 76.3
CsaV3_7G027130 Cucumis sativus L. HOM05D001296 ORTHO05D002609 5.0e-08 60.8 38 73.7
Lsat_1_v5_gn_4_6581 Lactuca sativa HOM05D001296 ORTHO05D002609 5.0e-08 60.8 38 71.1
Lsat_1_v5_gn_8_95720 Lactuca sativa HOM05D001296 ORTHO05D002609 5.0e-08 60.8 38 73.7
Mapoly0051s0089 Marchantia polymorpha HOM05D001296 ORTHO05D002609 5.0e-08 60.8 38 76.3
Oeu054494.1 Olea europaea HOM05D001296 ORTHO05D002609 5.0e-08 60.8 38 76.3
SalBow7G3230 Salvia bowleyana HOM05D001296 ORTHO05D002609 5.0e-08 60.8 38 76.3
SalBow7G3828 Salvia bowleyana HOM05D001296 ORTHO05D002609 5.0e-08 60.8 38 76.3
Sed0023452 Sechium edule HOM05D001296 ORTHO05D002609 5.0e-08 60.8 38 71.1
Hund06377 Selenicereus undatus HOM05D001296 ORTHO05D002609 5.0e-08 60.8 38 73.7
Hund14253 Selenicereus undatus HOM05D001296 ORTHO05D002609 5.0e-08 60.8 38 73.7
TPR.G20952 Trifolium pratense HOM05D001296 ORTHO05D002609 5.0e-08 60.8 39 71.8
TWI34G0972 Tripterygium wilfordii HOM05D001296 ORTHO05D002609 5.0e-08 60.8 38 76.3
arahy.Tifrunner.gnm1.ann1.0V448S Arachis hypogaea HOM05D001296 ORTHO05D002609 6.5e-08 60.5 38 76.3
arahy.Tifrunner.gnm1.ann1.E2BYBF Arachis hypogaea HOM05D001296 ORTHO05D002609 6.5e-08 60.5 38 76.3
CSS0035564 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D002609 6.5e-08 60.5 38 73.7
Ca_24367_v3 Cicer arietinum L. HOM05D001296 ORTHO05D002609 6.5e-08 60.5 38 76.3
ClCG01G009180 Citrullus lanatus HOM05D001296 ORTHO05D002609 6.5e-08 60.5 38 73.7
Prupe.2G121300 Prunus persica HOM05D001296 ORTHO05D002609 6.5e-08 60.5 38 73.7
SGA_v2.0_scaffold28G12031 Striga asiatica HOM05D001296 ORTHO05D002609 6.5e-08 60.5 40 70.0
Thecc.09G105800 Theobroma cacao HOM05D001296 ORTHO05D002609 6.5e-08 60.5 38 73.7
ATR0605G142 Amborella trichopoda HOM05D001296 ORTHO05D002609 8.5e-08 60.1 43 69.8
arahy.Tifrunner.gnm1.ann1.TK7DL4 Arachis hypogaea HOM05D001296 ORTHO05D002609 8.5e-08 60.1 38 73.7
AUR62010147 Chenopodium quinoa HOM05D001296 ORTHO05D002609 8.5e-08 60.1 38 73.7
AUR62013142 Chenopodium quinoa HOM05D001296 ORTHO05D002609 8.5e-08 60.1 38 73.7
CsaV3_1G046360 Cucumis sativus L. HOM05D001296 ORTHO05D002609 8.5e-08 60.1 38 68.4
ECA238G1562 Erigeron canadensis HOM05D001296 ORTHO05D002609 8.5e-08 60.1 38 73.7
unitig_699.g19823 Utricularia gibba HOM05D001296 ORTHO05D002609 8.5e-08 60.1 38 78.9
Ca_24713_v3 Cicer arietinum L. HOM05D001296 ORTHO05D002609 1.1e-07 59.7 38 73.7
Ca_24728_v3 Cicer arietinum L. HOM05D001296 ORTHO05D002609 1.1e-07 59.7 38 73.7
Haze_07990 Corylus avellana HOM05D001296 ORTHO05D002609 1.1e-07 59.7 35 80.0
Lalb_Chr09g0330881 Lupinus albus HOM05D001296 ORTHO05D002609 1.1e-07 59.7 38 73.7
Psat4g227120 Pisum sativum HOM05D001296 ORTHO05D002609 1.1e-07 59.7 38 73.7
CBR_g12259 Chara braunii HOM05D001296 ORTHO05D002609 1.5e-07 59.3 38 76.3
Lalb_Chr14g0371661 Lupinus albus HOM05D001296 ORTHO05D002609 1.5e-07 59.3 38 73.7
Oeu017863.1 Olea europaea HOM05D001296 ORTHO05D002609 1.5e-07 59.3 38 73.7
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.5e-07 59.3 38 73.7
Cc03_g09760 Coffea canephora HOM05D001296 ORTHO05D002609 1.9e-07 58.9 38 73.7
Gohir.D07G007500 Gossypium hirsutum HOM05D001296 ORTHO05D002609 1.9e-07 58.9 38 71.1
Gorai.001G007200 Gossypium raimondii HOM05D001296 ORTHO05D002609 1.9e-07 58.9 38 71.1
Sed0006373 Sechium edule HOM05D001296 ORTHO05D002609 1.9e-07 58.9 38 73.7
TPR.G8331 Trifolium pratense HOM05D001296 ORTHO05D002609 1.9e-07 58.9 38 73.7
CsaV3_6G015700 Cucumis sativus L. HOM05D001296 ORTHO05D002609 2.5e-07 58.5 38 71.1
Glyma.07G084000 Glycine max HOM05D001296 ORTHO05D002609 2.5e-07 58.5 38 73.7
Glyma.09G192900 Glycine max HOM05D001296 ORTHO05D002609 2.5e-07 58.5 38 73.7
Lj7A657T47 Lonicera japonica HOM05D001296 ORTHO05D002609 2.5e-07 58.5 38 68.4
Medtr5g005470 Medicago truncatula HOM05D001296 ORTHO05D002609 2.5e-07 58.5 38 71.1
Lj2g0011075 Lotus japonicus HOM05D001296 ORTHO05D002609 3.2e-07 58.2 38 71.1
PSO017G1891 Papaver somniferum HOM05D001296 ORTHO05D002609 3.2e-07 58.2 38 73.7
PSO063G2864 Papaver somniferum HOM05D001296 ORTHO05D002609 3.2e-07 58.2 38 73.7
RcHm_v2.0_Chr1g0345901 Rosa chinensis HOM05D001296 ORTHO05D002609 3.2e-07 58.2 38 73.7
RcHm_v2.0_Chr7g0208981 Rosa chinensis HOM05D001296 ORTHO05D002609 3.2e-07 58.2 38 71.1
Solyc05g051790.3 Solanum lycopersicum HOM05D001296 ORTHO05D002609 3.2e-07 58.2 38 71.1
Sopen05g030270 Solanum pennellii HOM05D001296 ORTHO05D002609 3.2e-07 58.2 38 71.1
MELO3C019700.2 Cucumis melo HOM05D001296 ORTHO05D002609 4.2e-07 57.8 38 71.1
Manes.03G023900 Manihot esculenta HOM05D001296 ORTHO05D002609 4.2e-07 57.8 38 71.1
Nitab4.5_0000254g0240 Nicotiana tabacum HOM05D001296 ORTHO05D002609 4.2e-07 57.8 38 73.7
Nitab4.5_0001066g0010 Nicotiana tabacum HOM05D001296 ORTHO05D002609 4.2e-07 57.8 38 73.7
Nitab4.5_0001769g0070 Nicotiana tabacum HOM05D001296 ORTHO05D002609 4.2e-07 57.8 38 73.7
Nitab4.5_0012293g0030 Nicotiana tabacum HOM05D001296 ORTHO05D002609 4.2e-07 57.8 38 73.7
Phvul.004G166200 Phaseolus vulgaris HOM05D001296 ORTHO05D002609 4.2e-07 57.8 38 71.1
Pp3c10_21990 Physcomitrium patens HOM05D001296 ORTHO05D002609 4.2e-07 57.8 38 73.7
PGSC0003DMG400019984 Solanum tuberosum HOM05D001296 ORTHO05D002609 4.2e-07 57.8 38 71.1
CAN.G905.5 Capsicum annuum HOM05D001296 ORTHO05D002609 5.5e-07 57.4 38 71.1
CAN.G911.33 Capsicum annuum HOM05D001296 ORTHO05D002609 5.5e-07 57.4 38 71.1
Peaxi162Scf00295g00014 Petunia axillaris HOM05D001296 ORTHO05D002609 5.5e-07 57.4 38 71.1
SMO201G0215 Selaginella moellendorffii HOM05D001296 ORTHO05D002609 5.5e-07 57.4 38 71.1
THA.LOC104811068 Tarenaya hassleriana HOM05D001296 ORTHO05D002609 5.5e-07 57.4 38 71.1
Zm00001eb079110 Zea mays HOM05D001296 ORTHO05D002609 5.5e-07 57.4 38 71.1
Hma1.2p1_0001F.1_g001620 Hydrangea macrophylla HOM05D001296 ORTHO05D002609 7.2e-07 57.0 38 68.4
Hma1.2p1_0831F.1_g225390 Hydrangea macrophylla HOM05D001296 ORTHO05D002609 7.2e-07 57.0 38 68.4
Os04g0487300 Oryza sativa ssp. japonica HOM05D001296 ORTHO05D002609 7.2e-07 57.0 38 68.4
DCAR_028687 Daucus carota HOM05D001296 ORTHO05D002609 1.2e-06 56.2 38 71.1
DCAR_028701 Daucus carota HOM05D001296 ORTHO05D002609 1.2e-06 56.2 38 71.1
VMungo0251G3705 Vigna mungo HOM05D001296 ORTHO05D002609 1.6e-06 55.8 38 68.4
PSO063G6586 Papaver somniferum HOM05D001296 ORTHO05D002609 2.1e-06 55.5 38 71.1
SalBow6G1313 Salvia bowleyana HOM05D001296 ORTHO05D002609 2.1e-06 55.5 38 68.4
PGSC0003DMG400030104 Solanum tuberosum HOM05D001296 ORTHO05D002609 2.1e-06 55.5 38 68.4
FAN01G0317 Fragaria x ananassa HOM05D000011 ORTHO05D000018 2.7e-06 55.1 32 81.2
Lj4g0022214 Lotus japonicus HOM05D001296 ORTHO05D002609 2.7e-06 55.1 38 68.4
MD15G1208600 Malus domestica HOM05D001296 ORTHO05D002609 2.7e-06 55.1 31 87.1
Peaxi162Scf00088g00162 Petunia axillaris HOM05D001296 ORTHO05D002609 2.7e-06 55.1 39 66.7
Medtr5g016200 Medicago truncatula HOM05D001296 ORTHO05D002609 3.6e-06 54.7 38 65.8
TWI60G0293 Tripterygium wilfordii HOM05D001296 ORTHO05D002609 3.6e-06 54.7 38 65.8
Migut.N03321 Erythranthe guttata HOM05D001296 ORTHO05D002609 8.0e-06 53.5 39 61.5
Pp3c6_19940 Physcomitrium patens HOM05D001296 ORTHO05D002609 8.0e-06 53.5 38 65.8


User provided reference genes

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