Gene: Pp3c6_19940
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c6_19940
- Transcript Identifier Pp3c6_19940V3.1
- Gene Type Coding gene
- Location Chr06 : 12698752-12699992 : positive
Gene Family Information
- ID HOM05D001296
- #Genes/#Species 485/100
- Phylogenetic origin
- ID ORTHO05D002609
- #Genes/#Species 275/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c6_19940V3.1
- pacid 32978946
- alias Phpat.006G073100
- alias Pp1s14_252V6
- uniprot A0A2K1KGF3
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IBA IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G57080 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0005736 | IBA | GOA Database | RNA polymerase I complex | |
| GO:0005666 | IBA | GOA Database | RNA polymerase III complex | |
| GO:0005665 | IBA | GOA Database | RNA polymerase II, core complex | |
| GO:0000419 | ISO | PLAZA Integrative Orthology | RNA polymerase V complex | AT3G57080 |
| GO:0000418 | ISO | PLAZA Integrative Orthology | RNA polymerase IV complex | AT3G22320 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR035913 | RPB5-like RNA polymerase subunit superfamily |
| IPR005571 | RNA polymerase, Rpb5, N-terminal |
| IPR000783 | RNA polymerase, subunit H/Rpb5 C-terminal |
| IPR036710 | RNA polymerase Rpb5, N-terminal domain superfamily |
| IPR014381 | DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus |
| IPR039531 | DNA-directed RNA polymerase subunit Rpb5-like |
| Mapman id | Description |
|---|---|
| 15.1.6.3 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 5 |