Gene: Os04g0487300
General Information
Structural Information
- Species Oryza sativa ssp. japonica
- Gene Identifier Os04g0487300
- Transcript Identifier Os04t0487300-01
- Gene Type Coding gene
- Location chr04 : 24354531-24355273 : negative
Gene Family Information
- ID HOM05D001296
- #Genes/#Species 485/100
- Phylogenetic origin
- ID ORTHO05D002609
- #Genes/#Species 275/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Os04t0487300-01
- MSU-ID LOC_Os04g41040.1
- MSU-ID LOC_Os04g41040.2
- uniprot B7EQI7
Descriptions
- Description Similar to DNA-directed RNA polymerases II 24 kDa polypeptide.
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003899 | IBA IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005736 | IBA | GOA Database | RNA polymerase I complex | |
| GO:0005666 | IBA | GOA Database | RNA polymerase III complex | |
| GO:0005665 | IBA | GOA Database | RNA polymerase II, core complex | |
| GO:0000418 | ISO | PLAZA Integrative Orthology | RNA polymerase IV complex | AT3G22320 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005571 | RNA polymerase, Rpb5, N-terminal |
| IPR036710 | RNA polymerase Rpb5, N-terminal domain superfamily |
| IPR039531 | DNA-directed RNA polymerase subunit Rpb5-like |
| IPR035913 | RPB5-like RNA polymerase subunit superfamily |
| IPR000783 | RNA polymerase, subunit H/Rpb5 C-terminal |
| IPR014381 | DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus |
| Mapman id | Description |
|---|---|
| 15.1.6.3 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 5 |