Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 5.4e-309 1063.5 556 100.0
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 3.8e-238 828.2 560 77.5
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 2.8e-156 556.2 502 60.6
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 1.3e-153 547.4 506 59.5
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 1.7e-153 547.0 502 59.0
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 4.2e-152 542.3 579 53.0
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 1.6e-151 540.4 502 58.8
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.8e-150 537.0 501 57.9
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 1.8e-150 537.0 511 56.8
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 3.0e-150 536.2 501 57.3
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 3.9e-150 535.8 516 56.0
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 3.9e-150 535.8 502 59.0
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 6.7e-150 535.0 501 57.9
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 1.1e-149 534.3 493 59.2
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 5.7e-149 531.9 502 58.6
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 2.2e-148 530.0 503 57.3
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 4.8e-148 528.9 544 54.8
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 4.8e-148 528.9 499 57.3
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 6.3e-148 528.5 510 57.6
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 1.8e-147 526.9 521 55.7
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 3.1e-147 526.2 511 55.0
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 3.1e-147 526.2 506 57.1
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 3.1e-147 526.2 501 56.9
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 4.1e-147 525.8 520 56.9
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 5.3e-147 525.4 473 60.3
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 4.5e-146 522.3 503 57.1
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 5.9e-146 521.9 502 57.6
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 7.7e-146 521.5 503 57.1
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 1.3e-145 520.8 505 59.4
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 2.2e-145 520.0 503 56.9
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 2.2e-145 520.0 503 56.9
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 2.9e-145 519.6 502 55.6
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 2.9e-145 519.6 503 56.7
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 5.0e-145 518.8 501 56.1
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 6.5e-145 518.5 514 55.3
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 8.5e-145 518.1 498 56.0
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 1.1e-144 517.7 487 57.7
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 1.4e-144 517.3 508 56.7
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 2.5e-144 516.5 502 59.2
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 9.4e-144 514.6 516 55.8
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 9.4e-144 514.6 502 57.0
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 1.6e-143 513.8 517 56.5
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.1e-143 513.5 504 56.0
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 1.4e-142 510.8 540 54.1
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 3.0e-142 509.6 485 57.3
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 3.9e-142 509.2 540 54.3
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 3.9e-142 509.2 484 56.4
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 6.7e-142 508.4 566 52.8
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 8.8e-142 508.1 485 57.1
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 1.1e-141 507.7 507 56.8
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 2.6e-141 506.5 485 56.9
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 5.7e-141 505.4 538 54.3
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 5.7e-141 505.4 502 55.4
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 7.4e-141 505.0 502 56.6
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 7.4e-141 505.0 502 56.2
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 3.7e-140 502.7 497 54.5
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 3.7e-140 502.7 502 54.6
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 3.1e-139 499.6 516 54.8
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 4.1e-139 499.2 501 56.1
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 4.1e-139 499.2 501 55.1
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 4.5e-138 495.7 502 55.8
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 2.7e-135 486.5 537 52.5
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 4.7e-135 485.7 486 54.7
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 1.0e-134 484.6 497 54.1
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 1.0e-134 484.6 503 54.3
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 1.4e-134 484.2 490 54.7
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 3.0e-134 483.0 492 55.9
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 4.0e-134 482.6 512 52.9
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 1.2e-133 481.1 472 55.9
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 1.2e-133 481.1 506 53.4
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 1.2e-133 481.1 508 54.9
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 1.5e-133 480.7 485 55.7
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 3.3e-133 479.6 494 52.8
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 3.3e-133 479.6 494 52.8
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 5.7e-133 478.8 512 52.5
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 5.7e-133 478.8 487 56.3
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 9.7e-133 478.0 501 55.9
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 1.7e-132 477.2 494 52.6
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 1.7e-132 477.2 494 52.6
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 1.7e-132 477.2 494 52.6
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 1.7e-132 477.2 533 52.9
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 8.2e-132 474.9 559 50.4
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 1.8e-131 473.8 379 63.6
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 8.5e-129 464.9 506 52.0
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 1.1e-128 464.5 520 51.2
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 8.0e-127 458.4 489 52.4
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 1.4e-126 457.6 507 51.7
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 3.0e-126 456.4 508 51.8
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 4.0e-126 456.1 496 53.2
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 4.0e-126 456.1 511 52.3
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 1.7e-124 450.7 483 52.4
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 2.8e-124 449.9 372 61.3
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 4.0e-118 429.5 426 54.7
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 9.8e-117 424.9 463 51.2
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 8.6e-113 411.8 509 47.9
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 7.0e-99 365.5 319 61.8
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 2.9e-76 290.4 411 41.6
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 2.1e-71 274.2 271 55.4
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 1.1e-70 271.9 454 38.8
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 3.2e-67 260.4 168 73.2
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 4.6e-66 256.5 240 55.8
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 3.8e-60 236.9 242 55.0
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 8.4e-60 235.7 247 53.4
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 3.2e-59 233.8 391 36.3
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 1.3e-57 228.4 505 33.5
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 2.9e-52 210.7 121 80.2
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 1.3e-49 201.8 121 80.2
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 7.4e-48 196.1 209 52.2
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 1.1e-46 192.2 206 51.5
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 1.0e-44 185.7 193 51.8
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 9.7e-40 169.1 288 35.8
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 6.5e-36 156.4 186 52.2
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 4.2e-35 153.7 171 47.4
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 4.4e-32 143.7 174 46.0
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 1.8e-30 138.3 78 76.9
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 2.6e-24 117.9 226 38.9
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 3.5e-21 107.5 95 63.2
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 4.5e-13 80.5 53 64.2
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 4.5e-13 80.5 52 67.3
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 7.2e-11 73.2 134 42.5
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 9.4e-11 72.8 73 47.9
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 5.2e-09 67.0 101 42.6
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 2.0e-08 65.1 102 44.1
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 7.5e-08 63.2 44 56.8
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 9.8e-08 62.8 35 85.7
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 8.3e-07 59.7 132 37.1
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 4.1e-06 57.4 66 51.5


User provided reference genes

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