Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb144170 Zea mays HOM05D000329 ORTHO05D015891 5.5e-110 401.7 345 100.0
Zm00001eb365340 Zea mays HOM05D000329 ORTHO05D002132 2.3e-79 300.1 331 74.3
Os01g0907400 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D002132 7.9e-24 115.5 336 35.7
RcHm_v2.0_Chr7g0191461 Rosa chinensis HOM05D000329 ORTHO05D002132 1.6e-13 81.3 44 75.0
Ciclev10018473m.g Citrus clementina HOM05D000329 ORTHO05D002132 2.8e-13 80.5 44 77.3
Eucgr.K02763 Eucalyptus grandis HOM05D000329 ORTHO05D002132 4.8e-13 79.7 44 72.7
Oeu023470.1 Olea europaea HOM05D000329 ORTHO05D002132 4.8e-13 79.7 44 75.0
FvH4_5g07090 Fragaria vesca HOM05D000329 ORTHO05D002132 6.3e-13 79.3 44 72.7
FAN08G1572 Fragaria x ananassa HOM05D000329 ORTHO05D002132 6.3e-13 79.3 44 72.7
FAN18G2482 Fragaria x ananassa HOM05D000329 ORTHO05D002132 6.3e-13 79.3 44 72.7
HPP92_013548 Vanilla planifolia HOM05D000329 ORTHO05D002132 6.3e-13 79.3 44 77.3
Dinv38483 Davidia involucrata HOM05D000329 ORTHO05D002132 1.1e-12 78.6 44 72.7
MSTRG.22937 Avicennia marina HOM05D000329 ORTHO05D002132 1.4e-12 78.2 44 72.7
Duzib084G0575 Durio zibethinus HOM05D000329 ORTHO05D002132 1.4e-12 78.2 44 75.0
Gohir.A09G244800 Gossypium hirsutum HOM05D000329 ORTHO05D002132 1.4e-12 78.2 44 75.0
Gohir.D09G245700 Gossypium hirsutum HOM05D000329 ORTHO05D002132 1.4e-12 78.2 44 75.0
Gorai.006G270100 Gossypium raimondii HOM05D000329 ORTHO05D002132 1.4e-12 78.2 44 75.0
Prupe.5G159200 Prunus persica HOM05D000329 ORTHO05D002132 1.4e-12 78.2 44 72.7
THA.LOC104821500 Tarenaya hassleriana HOM05D000329 ORTHO05D002132 1.4e-12 78.2 44 72.7
Thecc.03G121300 Theobroma cacao HOM05D000329 ORTHO05D002132 1.4e-12 78.2 44 75.0
AUR62001265 Chenopodium quinoa HOM05D000329 ORTHO05D002132 1.8e-12 77.8 44 72.7
AUR62025745 Chenopodium quinoa HOM05D000329 ORTHO05D002132 1.8e-12 77.8 44 72.7
Zm00001eb409800 Zea mays HOM05D000329 ORTHO05D002132 2.4e-12 77.4 44 75.0
FAN04G3077 Fragaria x ananassa HOM05D000329 ORTHO05D002132 3.1e-12 77.0 44 70.5
Os12g0279100 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D002132 3.1e-12 77.0 44 75.0
CDE04G2798 Ceratophyllum demersum HOM05D000329 ORTHO05D002132 5.3e-12 76.3 44 70.5
Lj4g0026894 Lotus japonicus HOM05D000329 ORTHO05D002132 5.3e-12 76.3 44 72.7
Oeu045488.1 Olea europaea HOM05D000329 ORTHO05D002132 6.9e-12 75.9 44 70.5
GSVIVG01007564001 Vitis vinifera HOM05D000329 ORTHO05D002132 9.0e-12 75.5 44 70.5
DCAR_016423 Daucus carota HOM05D000329 ORTHO05D015891 1.2e-11 75.1 44 70.5
FAN13G2326 Fragaria x ananassa HOM05D000329 ORTHO05D002132 1.5e-11 74.7 44 68.2
MD14G1165600 Malus domestica HOM05D000329 ORTHO05D002132 1.5e-11 74.7 44 70.5
TWI09G0874 Tripterygium wilfordii HOM05D000329 ORTHO05D002132 2.0e-11 74.3 44 68.2
TWI39G0078 Tripterygium wilfordii HOM05D000329 ORTHO05D002132 2.0e-11 74.3 44 68.2
unitig_26.g9676 Utricularia gibba HOM05D000329 ORTHO05D002132 3.4e-11 73.6 44 70.5
SGA_v2.0_scaffold19G08825 Striga asiatica HOM05D000329 ORTHO05D002132 7.6e-11 72.4 44 63.6
Aqoxy5G03611 Aquilegia oxysepala HOM05D000329 ORTHO05D002132 1.0e-10 72.0 44 68.2
Nitab4.5_0001360g0100 Nicotiana tabacum HOM05D000329 ORTHO05D002132 1.1e-09 68.6 44 65.9
Nitab4.5_0002531g0100 Nicotiana tabacum HOM05D000329 ORTHO05D002132 1.1e-09 68.6 44 65.9
SEGI_01288 Sequoiadendron giganteum HOM05D000329 ORTHO05D015891 1.4e-09 68.2 44 63.6
SEGI_26590 Sequoiadendron giganteum HOM05D000329 ORTHO05D002132 4.2e-09 66.6 44 63.6
DCAR_023885 Daucus carota HOM05D021074 ORTHO05D015891 7.2e-09 65.9 44 59.1
DCAR_032078 Daucus carota HOM05D000329 ORTHO05D015891 7.2e-09 65.9 44 59.1
Glyma.20G181000 Glycine max HOM05D000329 ORTHO05D002132 7.2e-09 65.9 44 61.4
Medtr1g094740 Medicago truncatula HOM05D000329 ORTHO05D002132 7.2e-09 65.9 44 61.4
TPR.G1943 Trifolium pratense HOM05D000329 ORTHO05D002132 1.2e-08 65.1 45 66.7
CsaV3_1G009200 Cucumis sativus L. HOM05D000329 ORTHO05D002132 1.6e-08 64.7 44 63.6
Manes.14G055900 Manihot esculenta HOM05D000329 ORTHO05D002132 1.6e-08 64.7 44 61.4
Psat6g182440 Pisum sativum HOM05D000329 ORTHO05D002132 2.1e-08 64.3 44 56.8
arahy.Tifrunner.gnm1.ann1.Z1XI1M Arachis hypogaea HOM05D000329 ORTHO05D002132 3.6e-08 63.5 44 59.1
Ca_10556_v3 Cicer arietinum L. HOM05D000329 ORTHO05D002132 3.6e-08 63.5 44 59.1
Sed0001069 Sechium edule HOM05D000329 ORTHO05D002132 3.6e-08 63.5 44 59.1
arahy.Tifrunner.gnm1.ann1.5T63VN Arachis hypogaea HOM05D000329 ORTHO05D002132 6.1e-08 62.8 44 59.1
Lj5g0007464 Lotus japonicus HOM05D000329 ORTHO05D002132 7.9e-08 62.4 44 56.8
ClCG08G007610 Citrullus lanatus HOM05D000329 ORTHO05D002132 1.0e-07 62.0 44 56.8
MELO3C019813.2 Cucumis melo HOM05D000329 ORTHO05D002132 1.0e-07 62.0 44 56.8
CsaV3_6G036580 Cucumis sativus L. HOM05D000329 ORTHO05D002132 1.0e-07 62.0 44 56.8
Aqoxy3G01318 Aquilegia oxysepala HOM05D000329 ORTHO05D002132 1.4e-07 61.6 44 59.1
SHI17297 Sapria himalayana HOM05D021074 ORTHO05D015891 1.4e-07 61.6 44 59.1
SGA_v2.0_scaffold2G01369 Striga asiatica HOM05D000329 ORTHO05D002132 1.4e-07 61.6 44 59.1
CSS0002547 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D002132 1.8e-07 61.2 44 59.1
MSTRG.8139 Avicennia marina HOM05D000329 ORTHO05D002132 3.9e-07 60.1 44 59.1
Cc02_g11210 Coffea canephora HOM05D000329 ORTHO05D002132 5.1e-07 59.7 44 56.8
SMO361G0193 Selaginella moellendorffii HOM05D000329 ORTHO05D002132 5.1e-07 59.7 44 56.8
SMO361G0386 Selaginella moellendorffii HOM05D000329 ORTHO05D002132 5.1e-07 59.7 44 56.8
Pp3c7_8710 Physcomitrium patens HOM05D000329 ORTHO05D002132 6.7e-07 59.3 44 56.8
CANSAT56G4152 Cannabis sativa HOM05D000329 ORTHO05D002132 8.8e-07 58.9 44 54.5
Lj2A16T73 Lonicera japonica HOM05D000329 ORTHO05D002132 1.1e-06 58.5 44 54.5
Potri.010G224700 Populus trichocarpa HOM05D000329 ORTHO05D002132 1.1e-06 58.5 44 56.8
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 1.1e-06 58.5 44 54.5
Sabra10G0173700 Salix brachista HOM05D000329 ORTHO05D002132 1.5e-06 58.2 44 54.5
MD06G1159300 Malus domestica HOM05D000329 ORTHO05D002132 1.9e-06 57.8 44 54.5
Pp3c11_24630 Physcomitrium patens HOM05D000329 ORTHO05D002132 2.5e-06 57.4 44 54.5
Lsat_1_v5_gn_1_28420 Lactuca sativa HOM05D000329 ORTHO05D002132 3.3e-06 57.0 44 50.0
Potri.008G037800 Populus trichocarpa HOM05D000329 ORTHO05D002132 3.3e-06 57.0 44 54.5
Carub.0006s0319 Capsella rubella HOM05D000329 ORTHO05D002132 4.3e-06 56.6 44 50.0
Nn2g11530 Nelumbo nucifera HOM05D000329 ORTHO05D002132 4.3e-06 56.6 44 50.0
THA.LOC104816419 Tarenaya hassleriana HOM05D000329 ORTHO05D002132 4.3e-06 56.6 44 52.3
EL10Ac6g14200 Beta vulgaris HOM05D000329 ORTHO05D002132 7.4e-06 55.8 44 52.3
Cpa.g.sc53.94 Carica papaya HOM05D000329 ORTHO05D002132 9.7e-06 55.5 44 52.3
AUR62038483 Chenopodium quinoa HOM05D000329 ORTHO05D002132 9.7e-06 55.5 44 52.3
Mapoly0006s0237 Marchantia polymorpha HOM05D000329 ORTHO05D002132 9.7e-06 55.5 44 54.5


User provided reference genes

Program Settings