Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb114180 Zea mays HOM05D000207 ORTHO05D004956 2.6e-40 168.3 87 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4872 Anthoceros agrestis HOM05D000170 ORTHO05D000159 3.1e-09 65.1 40 77.5
AL7G41900 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
AT4G14342 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
BcaC02g09324 Brassica carinata HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
BcaC06g35508 Brassica carinata HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
A04p07690 Brassica napus HOM05D000207 ORTHO05D000606 9.0e-09 63.5 38 81.6
A07p09140 Brassica napus HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
C04p41370 Brassica napus HOM05D000207 ORTHO05D000606 9.0e-09 63.5 38 81.6
C07p14090 Brassica napus HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
BraA04t16461Z Brassica rapa HOM05D000207 ORTHO05D000606 9.0e-09 63.5 38 81.6
Carub.0003s2357 Capsella rubella HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
CARHR099290 Cardamine hirsuta HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
Thhalv10021852m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
Thhalv10026688m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
Sp3g20990 Schrenkiella parvula HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
Sp7g12410 Schrenkiella parvula HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
Sed0003648 Sechium edule HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
Sed0023527 Sechium edule HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
THA.LOC104808632 Tarenaya hassleriana HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
Zm00001eb176950 Zea mays HOM05D000207 ORTHO05D004956 9.0e-09 63.5 38 81.6
HanXRQChr03g0091521 Helianthus annuus HOM05D000207 ORTHO05D004956 1.5e-08 62.8 38 78.9
HanXRQChr13g0421281 Helianthus annuus HOM05D000207 ORTHO05D004956 1.5e-08 62.8 38 78.9
Atru.chr4.2043 Acer truncatum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Atru.chr4.2046 Acer truncatum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
AagrBONN_evm.TU.Sc2ySwM_344.2015 Anthoceros agrestis HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Aqoxy1G01024 Aquilegia oxysepala HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
arahy.Tifrunner.gnm1.ann1.AU04TH Arachis hypogaea HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
arahy.Tifrunner.gnm1.ann1.DCT04E Arachis hypogaea HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
EL10Ac3g04993 Beta vulgaris HOM05D000001 ORTHO05D000003 2.0e-08 62.4 38 78.9
CSS0020261 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
CANSAT54G2786 Cannabis sativa HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
CANSAT78G1427 Cannabis sativa HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Cpa.g.c34811.1 Carica papaya HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
CiPaw.01G183100 Carya illinoinensis HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
CDE06G2823 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Ciclev10006856m.g Citrus clementina HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Ciclev10013219m.g Citrus clementina HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Cc03_g05640 Coffea canephora HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
COL.COLO4_26870 Corchorus olitorius HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
MELO3C006416.2 Cucumis melo HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
MELO3C007190.2 Cucumis melo HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
CsaV3_3G012020 Cucumis sativus L. HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Dinv27061 Davidia involucrata HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Duzib043G0002 Durio zibethinus HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Duzib160G0169 Durio zibethinus HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Duzib235G1015 Durio zibethinus HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Eucgr.E04319 Eucalyptus grandis HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Glyma.18G132700 Glycine max HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Gohir.1Z049411 Gossypium hirsutum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Gohir.A05G111600 Gossypium hirsutum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Gohir.D05G112000 Gossypium hirsutum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Gorai.009G116200 Gossypium raimondii HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Manes.15G041801 Manihot esculenta HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Mapoly0001s0403 Marchantia polymorpha HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Nn1g06872 Nelumbo nucifera HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Nitab4.5_0001379g0120 Nicotiana tabacum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Nitab4.5_0003038g0050 Nicotiana tabacum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Oeu005091.1 Olea europaea HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Os08g0444100 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
PSO170G5684 Papaver somniferum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
PSO198G0064 Papaver somniferum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
PSO210G1216 Papaver somniferum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
PSO210G6748 Papaver somniferum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Phvul.003G055200 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Potri.008G168000 Populus trichocarpa HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Potri.010G070500 Populus trichocarpa HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
PGR031G0434 Punica granatum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
QL06p018332 Quercus lobata HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Sabra08G0128000 Salix brachista HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Sabra10G0036900 Salix brachista HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
SMO232G0034 Selaginella moellendorffii HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Hund03049 Selenicereus undatus HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Hund11897 Selenicereus undatus HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Solyc04g008890.3 Solanum lycopersicum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Sopen04g004070 Solanum pennellii HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Sopen08g022730 Solanum pennellii HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
PGSC0003DMG400025301 Solanum tuberosum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
PGSC0003DMG400026872 Solanum tuberosum HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Thecc.06G005500 Theobroma cacao HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
TWI53G1374 Tripterygium wilfordii HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
TAR365G0659 Trochodendron aralioides HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
HPP92_005064 Vanilla planifolia HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
VMungo1127G0964 Vigna mungo HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
GSVIVG01027834001 Vitis vinifera HOM05D000207 ORTHO05D004956 2.0e-08 62.4 38 78.9
Aa31LG9G3040 Aethionema arabicum HOM05D001185 ORTHO05D002551 2.6e-08 62.0 38 78.9
AL3G37970 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 2.6e-08 62.0 38 78.9
AT3G23325 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 2.6e-08 62.0 38 78.9
BcaB02g08614 Brassica carinata HOM05D000207 ORTHO05D000606 2.6e-08 62.0 38 78.9
BolC4t25716H Brassica oleracea HOM05D000207 ORTHO05D004956 2.6e-08 62.0 38 78.9
BolC7t41906H Brassica oleracea HOM05D000207 ORTHO05D004956 2.6e-08 62.0 38 78.9
BraA07t28708Z Brassica rapa HOM05D000207 ORTHO05D004956 2.6e-08 62.0 38 78.9
Os08g0278966 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 2.6e-08 62.0 38 78.9
CiPaw.02G111100 Carya illinoinensis HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
Ca_08207_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
DCAR_024259 Daucus carota HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
ECA232G2626 Erigeron canadensis HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
ECA240G3918 Erigeron canadensis HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
Lsat_1_v5_gn_3_117461 Lactuca sativa HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
Lj3g0015983 Lotus japonicus HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
Lalb_Chr02g0158811 Lupinus albus HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
Medtr3g019300 Medicago truncatula HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
Medtr3g019310 Medicago truncatula HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
Medtr8g062750 Medicago truncatula HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
PSO063G3293 Papaver somniferum HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 78.9
Psat4g126040 Pisum sativum HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
Psat6g018880 Pisum sativum HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 76.3
vmacro21388 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 78.9
vmacro21393 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 3.4e-08 61.6 38 78.9
MSTRG.21917 Avicennia marina HOM05D000207 ORTHO05D004956 4.4e-08 61.2 34 85.3
CBR_g8906 Chara braunii HOM05D000207 ORTHO05D004956 4.4e-08 61.2 38 76.3
Migut.G00508 Erythranthe guttata HOM05D000207 ORTHO05D004956 4.4e-08 61.2 34 85.3
Migut.N00279 Erythranthe guttata HOM05D000207 ORTHO05D004956 4.4e-08 61.2 34 85.3
FAN09G1394 Fragaria x ananassa HOM05D000709 ORTHO05D004956 4.4e-08 61.2 39 74.4
Prupe.4G214000 Prunus persica HOM05D000207 ORTHO05D004956 4.4e-08 61.2 38 76.3
SalBow3G2895 Salvia bowleyana HOM05D000207 ORTHO05D004956 4.4e-08 61.2 34 85.3
unitig_748.g7329 Utricularia gibba HOM05D000207 ORTHO05D000606 4.4e-08 61.2 34 85.3
VMungo0251G1197 Vigna mungo HOM05D000207 ORTHO05D004956 4.4e-08 61.2 38 76.3
Actinidia11350 Actinidia chinensis HOM05D000207 ORTHO05D004956 5.8e-08 60.8 38 76.3
Actinidia39908 Actinidia chinensis HOM05D000207 ORTHO05D004956 5.8e-08 60.8 38 76.3
ClCG01G024000 Citrullus lanatus HOM05D000207 ORTHO05D004956 5.8e-08 60.8 38 76.3
ClCG05G004290 Citrullus lanatus HOM05D000207 ORTHO05D004956 5.8e-08 60.8 38 76.3
Solyc08g069080.4 Solanum lycopersicum HOM05D000207 ORTHO05D004956 5.8e-08 60.8 38 76.3
FvH4_3g22750 Fragaria vesca HOM05D000207 ORTHO05D004956 7.6e-08 60.5 38 76.3
FvH4_7g05750 Fragaria vesca HOM05D000207 ORTHO05D004956 7.6e-08 60.5 38 76.3
FAN01G2221 Fragaria x ananassa HOM05D000207 ORTHO05D004956 7.6e-08 60.5 38 76.3
FAN02G2410 Fragaria x ananassa HOM05D000709 ORTHO05D004956 7.6e-08 60.5 38 76.3
FAN05G5047 Fragaria x ananassa HOM05D000709 ORTHO05D004956 7.6e-08 60.5 38 76.3
FAN14G2395 Fragaria x ananassa HOM05D000709 ORTHO05D004956 7.6e-08 60.5 38 76.3
FAN16G2286 Fragaria x ananassa HOM05D000207 ORTHO05D004956 7.6e-08 60.5 38 76.3
FAN16G2624 Fragaria x ananassa HOM05D000207 ORTHO05D004956 7.6e-08 60.5 38 76.3
FAN25G2312 Fragaria x ananassa HOM05D000207 ORTHO05D004956 7.6e-08 60.5 38 76.3
MD03G1200200 Malus domestica HOM05D000207 ORTHO05D004956 7.6e-08 60.5 38 73.7
MD11G1217300 Malus domestica HOM05D000207 ORTHO05D004956 7.6e-08 60.5 38 73.7
RcHm_v2.0_Chr5g0039761 Rosa chinensis HOM05D000207 ORTHO05D004956 7.6e-08 60.5 38 76.3
Hma1.2p1_0992F.1_g245270 Hydrangea macrophylla HOM05D000207 ORTHO05D004956 9.9e-08 60.1 38 73.7
arahy.Tifrunner.gnm1.ann1.Q94Q39 Arachis hypogaea HOM05D000677 ORTHO05D000727 1.7e-07 59.3 38 73.7
Eucgr.L00218 Eucalyptus grandis HOM05D000207 ORTHO05D004956 1.7e-07 59.3 38 73.7
PRCOL_00006150 Prasinoderma coloniale HOM05D000207 ORTHO05D004956 1.7e-07 59.3 35 77.1
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 2.9e-07 58.5 36 77.8
Cfa022948 Carpinus fangiana HOM05D000411 ORTHO05D004956 2.9e-07 58.5 38 73.7
AUR62026315 Chenopodium quinoa HOM05D000207 ORTHO05D004956 2.9e-07 58.5 36 77.8
AUR62026510 Chenopodium quinoa HOM05D000207 ORTHO05D004956 2.9e-07 58.5 36 77.8
CsaV3_6G051140 Cucumis sativus L. HOM05D000207 ORTHO05D004956 2.9e-07 58.5 36 77.8
Dinv36552 Davidia involucrata HOM05D000207 ORTHO05D004956 2.9e-07 58.5 36 77.8
FAN03G1535 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.9e-07 58.5 37 75.7
FAN06G2225 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.9e-07 58.5 37 75.7
FAN10G1241 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.9e-07 58.5 37 75.7
Glyma.08G291500 Glycine max HOM05D000207 ORTHO05D004956 2.9e-07 58.5 36 77.8
Sc25g0003710 Simmondsia chinensis HOM05D000207 ORTHO05D004956 2.9e-07 58.5 36 77.8
PGSC0003DMG400029581 Solanum tuberosum HOM05D000207 ORTHO05D004956 2.9e-07 58.5 36 77.8
HPP92_005049 Vanilla planifolia HOM05D000207 ORTHO05D004956 2.9e-07 58.5 36 77.8
Lsat_1_v5_gn_6_103061 Lactuca sativa HOM05D000207 ORTHO05D004956 4.9e-07 57.8 36 75.0
vmacro15450 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 4.9e-07 57.8 36 77.8
arahy.Tifrunner.gnm1.ann1.6C1XPZ Arachis hypogaea HOM05D000207 ORTHO05D004956 1.9e-06 55.8 36 75.0
Peaxi162Scf00681g00334 Petunia axillaris HOM05D000207 ORTHO05D004956 2.4e-06 55.5 35 80.0


User provided reference genes

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