Gene: Solyc08g069080.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g069080.4
  • Transcript Identifier Solyc08g069080.4.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 56256841-56259907 : positive

Gene Family Information

  • ID HOM05D000207
  • #Genes/#Species 1934/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g069080.4.1
  • uniprot A0A3Q7HQA1
  • gene_id Solyc08g069080

Descriptions

  • Description Splicing factor subunit (AHRD V3.3 *** A0A078FIH3_BRANA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006468
ISO
PLAZA Homology (enrichment)protein phosphorylation HOM05D000207

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
ISO
PLAZA Homology (enrichment)ATP binding HOM05D000207
GO:0004672
ISO
PLAZA Homology (enrichment)protein kinase activity HOM05D000207
GO:0004674
ISO
PLAZA Homology (enrichment)protein serine/threonine kinase activity HOM05D000207

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0005686
IBA
GOA DatabaseU2 snRNP

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017089 Splicing factor 3B, subunit 5
IPR009846 Splicing factor 3B subunit 5/RDS3 complex subunit 10
Mapman id Description
16.2.1.2.4.5 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B5