Gene: AT3G23325
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G23325
- Transcript Identifier AT3G23325.1
- Gene Type Coding gene
- Location Chr3 : 8345808-8346856 : positive
Gene Family Information
- ID HOM05D000207
- #Genes/#Species 1934/100
- Phylogenetic origin
- ID ORTHO05D004956
- #Genes/#Species 167/90
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G23325.1
- uniprot Q9LW64
Descriptions
- Description Splicing factor 3B subunit 5/RDS3 complex subunit 10
- Computational description Splicing factor 3B subunit 5/RDS3 complex subunit 10; CONTAINS InterPro DOMAIN/s: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (InterPro:IPR009846), Splicing factor 3B, subunit 5 (InterPro:IPR017089); BEST Arabidopsis thaliana protein match is: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (TAIR:AT4G14342.1); Has 334 Blast hits to 334 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 97; Plants - 62; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000398 | IBA | Gene Ontology | mRNA splicing, via spliceosome | 1 |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0006468 | ISO | PLAZA Homology (enrichment) | protein phosphorylation | HOM05D000207 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003674 | ND | Gene Ontology | molecular_function | |
| GO:0005524 | ISO | PLAZA Homology (enrichment) | ATP binding | HOM05D000207 |
| GO:0004672 | ISO | PLAZA Homology (enrichment) | protein kinase activity | HOM05D000207 |
| GO:0004674 | ISO | PLAZA Homology (enrichment) | protein serine/threonine kinase activity | HOM05D000207 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005686 | IBA | Gene Ontology | U2 snRNP | 1 |
| GO:0071011 | IBA | Gene Ontology | precatalytic spliceosome | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.1.2.4.5 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B5 |