Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 3.4e-173 611.7 333 100.0
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 8.9e-166 587.0 334 96.1
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.1e-150 537.0 337 88.1
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 3.1e-150 535.4 336 88.4
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 2.0e-149 532.7 337 89.0
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 4.4e-149 531.6 338 87.9
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 9.9e-149 530.4 337 86.9
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 9.9e-149 530.4 338 86.4
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.3e-148 530.0 337 86.9
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 2.2e-148 529.3 337 88.7
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.2e-148 529.3 336 88.4
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 2.2e-148 529.3 337 86.6
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 3.8e-148 528.5 336 88.4
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 6.4e-148 527.7 337 86.9
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 6.4e-148 527.7 337 88.1
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 6.4e-148 527.7 337 88.1
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.9e-147 526.2 337 87.8
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 2.4e-147 525.8 338 86.7
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 2.4e-147 525.8 338 88.2
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 5.4e-147 524.6 337 87.2
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 5.4e-147 524.6 337 87.2
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 5.4e-147 524.6 337 86.6
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 5.4e-147 524.6 337 87.2
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 5.4e-147 524.6 337 87.2
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.2e-146 523.5 337 82.5
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 1.6e-146 523.1 335 86.6
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 2.7e-146 522.3 336 86.0
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 2.7e-146 522.3 337 86.6
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 4.6e-146 521.5 337 86.4
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 6.0e-146 521.2 349 85.4
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 7.8e-146 520.8 337 86.4
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 1.0e-145 520.4 337 87.2
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.3e-145 520.0 337 85.8
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.7e-145 519.6 337 86.9
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 2.3e-145 519.2 339 86.4
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 2.3e-145 519.2 337 86.1
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.0e-145 518.8 337 86.4
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 3.9e-145 518.5 336 85.7
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 6.6e-145 517.7 338 86.4
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 6.6e-145 517.7 341 85.9
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 1.1e-144 516.9 337 85.8
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 2.5e-144 515.8 334 85.9
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 5.6e-144 514.6 339 85.8
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 9.6e-144 513.8 336 84.5
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 2.8e-143 512.3 339 85.0
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 3.6e-143 511.9 337 84.9
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 4.8e-143 511.5 365 81.1
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 8.1e-143 510.8 337 84.9
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 8.1e-143 510.8 336 84.5
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 8.1e-143 510.8 336 84.5
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.1e-142 510.4 326 87.1
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 2.4e-142 509.2 339 85.3
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 3.1e-142 508.8 335 85.4
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 3.1e-142 508.8 341 84.8
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 4.0e-142 508.4 337 79.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 6.9e-142 507.7 355 81.7
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 6.9e-142 507.7 355 81.7
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 6.9e-142 507.7 338 84.3
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 6.9e-142 507.7 338 84.3
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 9.0e-142 507.3 354 82.5
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 9.0e-142 507.3 336 84.2
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.2e-141 506.9 338 82.8
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.5e-141 506.5 340 84.1
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.5e-141 506.5 335 85.4
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.6e-141 505.8 338 82.2
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 7.6e-141 504.2 338 82.0
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.7e-140 503.1 359 80.8
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 4.9e-140 501.5 337 83.1
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 2.4e-139 499.2 337 83.1
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 2.4e-139 499.2 372 78.0
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 3.2e-139 498.8 337 82.5
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.2e-138 496.9 340 83.5
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.6e-138 496.5 337 83.1
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.1e-138 496.1 352 81.2
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 2.1e-138 496.1 340 83.5
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 4.6e-138 495.0 321 86.9
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 6.0e-138 494.6 334 77.8
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 7.9e-138 494.2 339 79.9
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 1.3e-137 493.4 335 81.5
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 5.1e-137 491.5 337 81.9
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 1.1e-136 490.3 377 75.6
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.9e-136 489.6 336 81.2
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 2.5e-136 489.2 338 82.5
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 2.5e-136 489.2 338 82.5
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 2.5e-136 489.2 337 83.4
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 4.3e-136 488.4 344 81.1
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 1.6e-135 486.5 337 83.4
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 2.1e-135 486.1 337 83.4
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 2.4e-134 482.6 348 80.2
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 4.0e-134 481.9 330 83.3
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 3.4e-133 478.8 347 79.5
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 5.8e-133 478.0 338 81.1
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 7.6e-133 477.6 335 80.3
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.9e-132 475.7 332 82.2
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 2.9e-132 475.7 348 80.2
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 9.3e-131 470.7 321 82.9
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 1.8e-129 466.5 321 82.6
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 2.3e-129 466.1 366 75.1
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.3e-129 466.1 327 82.9
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.3e-129 466.1 327 82.9
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.3e-128 461.8 337 81.3
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 3.1e-126 455.7 305 86.6
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.0e-126 454.1 366 75.7
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.0e-126 454.1 366 75.7
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 8.4e-124 447.6 336 70.8
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 9.3e-123 444.1 336 76.8
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.8e-121 439.9 336 77.1
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 4.5e-117 425.2 332 75.9
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.7e-116 423.3 352 72.7
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 1.6e-114 416.8 284 83.1
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 5.7e-112 408.3 516 54.1
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 5.0e-108 395.2 274 84.3
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 1.1e-107 394.0 225 86.2
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.2e-103 379.8 339 72.0
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 5.3e-102 375.2 318 73.6
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.9e-99 366.7 321 71.3
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.1e-96 357.5 254 85.4
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 4.4e-96 355.5 275 74.9
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 2.4e-94 349.7 307 72.0
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.2e-92 343.2 335 66.0
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 5.2e-89 332.0 384 48.7
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.8e-81 307.0 329 54.7
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 3.4e-80 302.8 147 95.9
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 7.3e-67 258.5 209 78.5
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.7e-63 247.3 183 69.4
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 8.3e-63 245.0 341 46.9
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.3e-52 211.1 116 86.2
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 2.1e-42 177.2 166 65.7
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.6e-42 176.4 82 97.6
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.1e-38 164.9 90 88.9
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 2.8e-34 150.2 90 90.0
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 4.8e-34 149.4 90 87.8
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 8.4e-23 112.1 55 94.5
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.5e-19 100.5 64 85.9
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.2e-16 91.7 240 28.8
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 3.4e-16 90.1 200 28.5
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.9e-15 86.3 84 81.0
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 9.3e-14 82.0 64 64.1
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 5.1e-12 76.3 39 87.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 5.7e-11 72.8 45 75.6
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 9.6e-11 72.0 54 66.7
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 9.6e-11 72.0 41 87.8
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 4.8e-10 69.7 30 96.7


User provided reference genes

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