Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb101730 Zea mays HOM05D003635 ORTHO05D004283 7.2e-78 293.9 153 100.0
Zm00001eb421210 Zea mays HOM05D002023 ORTHO05D002049 6.6e-23 111.3 73 76.7
Zm00001eb014440 Zea mays HOM05D002023 ORTHO05D010966 4.3e-22 108.6 59 89.8
Zm00001eb217510 Zea mays HOM05D000911 ORTHO05D445770 4.0e-12 75.5 45 86.7
Zm00001eb128630 Zea mays HOM05D003635 ORTHO05D004283 6.8e-12 74.7 38 92.1
Zm00001eb335840 Zea mays HOM05D002023 ORTHO05D010966 1.3e-10 70.5 57 63.2
Zm00001eb183430 Zea mays HOM05D003434 ORTHO05D004465 9.2e-09 64.3 42 78.6
Zm00001eb245760 Zea mays HOM05D003434 ORTHO05D004465 2.7e-08 62.8 42 73.8
Zm00001eb231820 Zea mays HOM05D003635 ORTHO05D004283 7.8e-08 61.2 38 78.9
Os02g0591800 Oryza sativa ssp. japonica HOM05D003434 ORTHO05D004465 1.7e-07 60.1 42 71.4
Os02g0137400 Oryza sativa ssp. japonica HOM05D003635 ORTHO05D004283 2.3e-07 59.7 38 76.3
Mapoly0009s0019 Marchantia polymorpha HOM05D003635 ORTHO05D004283 3.0e-07 59.3 38 73.7
AagrBONN_evm.TU.Sc2ySwM_362.982 Anthoceros agrestis HOM05D003635 ORTHO05D004283 5.1e-07 58.5 38 71.1
AagrBONN_evm.TU.Sc2ySwM_368.1182 Anthoceros agrestis HOM05D003635 ORTHO05D004283 5.1e-07 58.5 38 71.1
Zm00001eb385690 Zea mays HOM05D001020 ORTHO05D001137 5.1e-07 58.5 44 75.0
CARHR289050 Cardamine hirsuta HOM05D003635 ORTHO05D021615 6.6e-07 58.2 61 57.4
CARHR289060 Cardamine hirsuta HOM05D003635 ORTHO05D004283 6.6e-07 58.2 61 57.4
Thhalv10006588m.g Eutrema salsugineum HOM05D003635 ORTHO05D004283 6.6e-07 58.2 61 57.4
unitig_736.g22269 Utricularia gibba HOM05D003635 ORTHO05D004283 6.6e-07 58.2 38 73.7
Zm00001eb291090 Zea mays HOM05D000868 ORTHO05D000711 6.6e-07 58.2 53 62.3
MELO3C023823.2 Cucumis melo HOM05D003635 ORTHO05D004283 8.6e-07 57.8 38 73.7
CsaV3_5G006650 Cucumis sativus L. HOM05D003635 ORTHO05D004283 8.6e-07 57.8 38 73.7
Migut.N02978 Erythranthe guttata HOM05D003635 ORTHO05D004283 8.6e-07 57.8 38 73.7
SalBow7G2745 Salvia bowleyana HOM05D003635 ORTHO05D004283 8.6e-07 57.8 38 73.7
ClCG02G013500 Citrullus lanatus HOM05D003635 ORTHO05D004283 1.1e-06 57.4 64 54.7
Cc00_g13950 Coffea canephora HOM05D003635 ORTHO05D004283 1.1e-06 57.4 61 55.7
Nn1g07032 Nelumbo nucifera HOM05D003434 ORTHO05D004465 1.1e-06 57.4 42 69.0
Psat5g199040 Pisum sativum HOM05D003635 ORTHO05D004283 1.1e-06 57.4 38 71.1
Sc06g0001910 Simmondsia chinensis HOM05D003635 ORTHO05D004283 1.1e-06 57.4 61 55.7
Aa31LG10G9870 Aethionema arabicum HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
Ah.09g234270 Amaranthus hybridus HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
AL5G36324 Arabidopsis lyrata HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
AL5G36340 Arabidopsis lyrata HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
AT3G55200 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
AT3G55220 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
BcaB02g07694 Brassica carinata HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
BcaC09g48162 Brassica carinata HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
BolC1t05325H Brassica oleracea HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
BraA01t04192Z Brassica rapa HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
Carub.0005s2186 Capsella rubella HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
Carub.0005s2188 Capsella rubella HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
CBR_g32401 Chara braunii HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
AUR62022537 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
AUR62035965 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
AUR62044277 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 55.7
Ca_11305_v3 Cicer arietinum L. HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
FvH4_1g28630 Fragaria vesca HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
FAN19G1456 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
FAN23G1337 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
FAN23G3063 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
FAN26G2866 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
FAN28G1205 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
Glyma.10G291300 Glycine max HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
Glyma.20G240500 Glycine max HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
HanXRQChr08g0228691 Helianthus annuus HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 54.1
HanXRQChr14g0437201 Helianthus annuus HOM05D003635 ORTHO05D004283 1.5e-06 57.0 61 54.1
Lalb_Chr02g0143971 Lupinus albus HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
Lalb_Chr06g0164191 Lupinus albus HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
RcHm_v2.0_Chr3g0492631 Rosa chinensis HOM05D003635 ORTHO05D004283 1.5e-06 57.0 38 71.1
Hund24225 Selenicereus undatus HOM05D003434 ORTHO05D023136 1.5e-06 57.0 81 46.9
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 1.5e-06 57.0 43 72.1
Actinidia02986 Actinidia chinensis HOM05D003635 ORTHO05D004283 1.9e-06 56.6 38 71.1
CSS0019699 Camellia sinensis var. sinensis HOM05D003635 ORTHO05D004283 1.9e-06 56.6 38 71.1
CAN.G1557.8 Capsicum annuum HOM05D003635 ORTHO05D004283 1.9e-06 56.6 38 71.1
COL.COLO4_10911 Corchorus olitorius HOM05D003635 ORTHO05D004283 1.9e-06 56.6 61 54.1
ECA233G0861 Erigeron canadensis HOM05D003635 ORTHO05D004283 1.9e-06 56.6 38 71.1
Gohir.D10G219000 Gossypium hirsutum HOM05D003635 ORTHO05D004283 1.9e-06 56.6 61 54.1
Gorai.011G245700 Gossypium raimondii HOM05D003635 ORTHO05D004283 1.9e-06 56.6 61 54.1
Manes.07G109100 Manihot esculenta HOM05D003635 ORTHO05D004283 1.9e-06 56.6 38 71.1
Nitab4.5_0000426g0110 Nicotiana tabacum HOM05D003635 ORTHO05D004283 1.9e-06 56.6 38 71.1
Nitab4.5_0012497g0010 Nicotiana tabacum HOM05D003635 ORTHO05D004283 1.9e-06 56.6 38 71.1
Peaxi162Scf00060g00511 Petunia axillaris HOM05D003635 ORTHO05D004283 1.9e-06 56.6 38 71.1
Sp5g07240 Schrenkiella parvula HOM05D003635 ORTHO05D004283 1.9e-06 56.6 61 54.1
Sed0026990 Sechium edule HOM05D003635 ORTHO05D004283 1.9e-06 56.6 38 71.1
Sopen04g005450 Solanum pennellii HOM05D003635 ORTHO05D004283 1.9e-06 56.6 38 71.1
PGSC0003DMG400030187 Solanum tuberosum HOM05D003635 ORTHO05D004283 1.9e-06 56.6 38 71.1
ATR0820G062 Amborella trichopoda HOM05D003635 ORTHO05D004283 2.5e-06 56.2 38 68.4
Aqoxy1G01641 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 2.5e-06 56.2 38 68.4
Aqoxy2G04103 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 2.5e-06 56.2 38 68.4
Dinv08315 Davidia involucrata HOM05D003434 ORTHO05D002822 2.5e-06 56.2 42 69.0
Duzib114G0516 Durio zibethinus HOM05D003635 ORTHO05D004283 2.5e-06 56.2 61 54.1
Eucgr.J01165 Eucalyptus grandis HOM05D003635 ORTHO05D004283 2.5e-06 56.2 61 54.1
Lj5g0001158 Lotus japonicus HOM05D003635 ORTHO05D004283 2.5e-06 56.2 61 54.1
PGR142G3382 Punica granatum HOM05D003635 ORTHO05D004283 2.5e-06 56.2 61 54.1
SEGI_11055 Sequoiadendron giganteum HOM05D003635 ORTHO05D004283 2.5e-06 56.2 38 68.4
SGA_v2.0_scaffold364G49990 Striga asiatica HOM05D003635 ORTHO05D004283 2.5e-06 56.2 38 71.1
SGA_v2.0_scaffold54G19634 Striga asiatica HOM05D003635 ORTHO05D004283 2.5e-06 56.2 38 71.1
Atru.chr12.571 Acer truncatum HOM05D003635 ORTHO05D004283 3.3e-06 55.8 38 68.4
EL10Ac2g03470 Beta vulgaris HOM05D003635 ORTHO05D004283 3.3e-06 55.8 61 54.1
Ciclev10030532m.g Citrus clementina HOM05D003635 ORTHO05D004283 3.3e-06 55.8 38 68.4
Rhsim06G0196400 Rhododendron simsii HOM05D003434 ORTHO05D004465 3.3e-06 55.8 42 66.7
MSTRG.22089 Avicennia marina HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
CANSAT56G1536 Cannabis sativa HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Cpa.g.sc1.324 Carica papaya HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Cfa001548 Carpinus fangiana HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
CiPaw.01G281100 Carya illinoinensis HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
CiPaw.02G179700 Carya illinoinensis HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
CiPaw.11G173200 Carya illinoinensis HOM05D003434 ORTHO05D004465 4.3e-06 55.5 42 66.7
CDE02G0853 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
CDE09G0269 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Haze_16985 Corylus avellana HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Duzib128G1000 Durio zibethinus HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Gohir.A05G351700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Gohir.A10G210700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Gorai.012G068000 Gossypium raimondii HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Lj8A158G80 Lonicera japonica HOM05D003434 ORTHO05D004465 4.3e-06 55.5 42 69.0
Lj8A91T61 Lonicera japonica HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
MBI01_g15748_MAGBIO Magnolia biondii HOM05D003434 ORTHO05D004465 4.3e-06 55.5 42 66.7
MD01G1119800 Malus domestica HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
MD07G1188800 Malus domestica HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Medtr1g115525 Medicago truncatula HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Medtr4g115500 Medicago truncatula HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Nn2g10520 Nelumbo nucifera HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Nn2g12856 Nelumbo nucifera HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Oeu016870.1 Olea europaea HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
PSO339G2718 Papaver somniferum HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
PSO384G4083 Papaver somniferum HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Phvul.007G009600 Phaseolus vulgaris HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Phvul.008G022900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 4.3e-06 55.5 42 66.7
Psat1g081240 Pisum sativum HOM05D000684 ORTHO05D006827 4.3e-06 55.5 38 68.4
Prupe.2G226500 Prunus persica HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
QL08p057820 Quercus lobata HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
SMO116G0157 Selaginella moellendorffii HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Hund19994 Selenicereus undatus HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
SEGI_35123 Sequoiadendron giganteum HOM05D003434 ORTHO05D004465 4.3e-06 55.5 42 64.3
THA.LOC104810010 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
THA.LOC104824257 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
Thecc.10G059000 Theobroma cacao HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
TPR.G13999 Trifolium pratense HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
TWI38G2119 Tripterygium wilfordii HOM05D003434 ORTHO05D004465 4.3e-06 55.5 42 69.0
TAR369G0684 Trochodendron aralioides HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
vmacro11838 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 4.3e-06 55.5 42 66.7
vmacro19412 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 4.3e-06 55.5 42 66.7
HPP92_016710 Vanilla planifolia HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
HPP92_027161 Vanilla planifolia HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
VMungo0720G0614 Vigna mungo HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
GSVIVG01005970001 Vitis vinifera HOM05D003635 ORTHO05D004283 4.3e-06 55.5 38 68.4
arahy.Tifrunner.gnm1.ann1.L3HXPU Arachis hypogaea HOM05D003434 ORTHO05D004465 5.6e-06 55.1 42 66.7
arahy.Tifrunner.gnm1.ann1.LC97RS Arachis hypogaea HOM05D003434 ORTHO05D004465 5.6e-06 55.1 42 66.7
DCAR_015231 Daucus carota HOM05D003635 ORTHO05D004283 5.6e-06 55.1 38 65.8
DCAR_019162 Daucus carota HOM05D003635 ORTHO05D004283 5.6e-06 55.1 38 65.8
Lsat_1_v5_gn_8_18261 Lactuca sativa HOM05D003635 ORTHO05D004283 5.6e-06 55.1 38 68.4
Lj1A848T59 Lonicera japonica HOM05D003434 ORTHO05D004465 5.6e-06 55.1 42 69.0
Pp3c16_16800 Physcomitrium patens HOM05D003635 ORTHO05D004283 5.6e-06 55.1 38 65.8
TAR624G0430 Trochodendron aralioides HOM05D003434 ORTHO05D004465 5.6e-06 55.1 42 66.7
Medtr4g115810 Medicago truncatula HOM05D003635 ORTHO05D004283 7.3e-06 54.7 38 65.8
Phvul.001G137800 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 7.3e-06 54.7 42 64.3
Phvul.001G138125 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 7.3e-06 54.7 42 64.3
GSVIVG01028448001 Vitis vinifera HOM05D003434 ORTHO05D004465 7.3e-06 54.7 42 64.3
CAN.G1237.13 Capsicum annuum HOM05D003434 ORTHO05D004465 9.6e-06 54.3 42 66.7
Ciclev10008977m.g Citrus clementina HOM05D003434 ORTHO05D004465 9.6e-06 54.3 42 66.7
Duzib213G0358 Durio zibethinus HOM05D003434 ORTHO05D004465 9.6e-06 54.3 42 66.7
Hma1.2p1_0687F.1_g203600 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 9.6e-06 54.3 42 64.3
Hma1.2p1_1789F.1_g302480 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 9.6e-06 54.3 42 64.3
Hma1.2p1_2288F.1_g318950 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 9.6e-06 54.3 42 64.3
Manes.10G036500 Manihot esculenta HOM05D003635 ORTHO05D004283 9.6e-06 54.3 38 68.4
Nitab4.5_0000677g0140 Nicotiana tabacum HOM05D003434 ORTHO05D004465 9.6e-06 54.3 42 66.7
Potri.008G048900 Populus trichocarpa HOM05D003635 ORTHO05D004283 9.6e-06 54.3 38 68.4
Potri.010G212100 Populus trichocarpa HOM05D003635 ORTHO05D004283 9.6e-06 54.3 38 68.4
Solyc04g016380.3 Solanum lycopersicum HOM05D003434 ORTHO05D004465 9.6e-06 54.3 42 66.7
Sopen04g008470 Solanum pennellii HOM05D003434 ORTHO05D004465 9.6e-06 54.3 42 66.7
TAR626G1243 Trochodendron aralioides HOM05D003434 ORTHO05D004465 9.6e-06 54.3 42 64.3


User provided reference genes

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