Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 1.7e-277 958.7 497 100.0
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 1.4e-223 779.6 503 81.9
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 3.4e-185 652.1 452 72.3
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.7e-181 639.8 479 69.1
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 8.6e-181 637.5 453 70.4
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 2.3e-178 629.4 465 68.8
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 8.9e-178 627.5 462 68.2
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.5e-177 626.7 509 65.0
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 2.6e-177 625.9 501 64.5
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 4.4e-177 625.2 516 64.9
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 2.9e-176 622.5 466 68.5
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 4.9e-176 621.7 504 65.9
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 4.9e-176 621.7 509 64.8
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 1.1e-175 620.5 452 70.1
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 1.9e-175 619.8 485 65.8
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 3.2e-175 619.0 475 67.8
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 5.4e-175 618.2 474 67.5
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 9.2e-175 617.5 476 64.7
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 2.0e-174 616.3 506 65.0
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.7e-174 615.9 448 69.2
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 2.7e-174 615.9 471 66.5
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 3.5e-174 615.5 479 64.5
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 3.5e-174 615.5 480 66.0
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 6.0e-174 614.8 461 68.1
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 6.0e-174 614.8 452 68.6
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 1.0e-173 614.0 505 64.4
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 1.3e-173 613.6 449 68.6
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 1.7e-173 613.2 514 63.2
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 2.3e-173 612.8 463 67.4
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 2.3e-173 612.8 479 66.0
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 3.0e-173 612.5 450 68.2
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 5.0e-173 611.7 497 64.0
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 1.1e-172 610.5 492 65.4
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 2.5e-172 609.4 573 59.3
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 2.5e-172 609.4 496 63.7
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 2.5e-172 609.4 510 63.5
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 3.3e-172 609.0 501 64.9
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 3.3e-172 609.0 516 63.4
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 3.3e-172 609.0 497 63.8
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 4.3e-172 608.6 502 63.9
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 1.2e-171 607.1 462 66.9
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 2.1e-171 606.3 471 67.3
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 2.8e-171 605.9 471 66.5
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 2.8e-171 605.9 479 65.1
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 3.6e-171 605.5 453 68.2
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 3.6e-171 605.5 445 68.3
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 8.1e-171 604.4 510 62.5
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 1.8e-170 603.2 467 65.1
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 1.8e-170 603.2 475 65.9
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 1.8e-170 603.2 510 62.9
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 5.2e-170 601.7 515 61.4
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 6.8e-170 601.3 506 63.0
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 1.5e-169 600.1 516 63.0
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 2.0e-169 599.7 502 62.5
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 2.6e-169 599.4 467 66.0
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 2.6e-169 599.4 467 65.7
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 3.4e-169 599.0 489 63.6
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 4.4e-169 598.6 501 62.5
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 5.8e-169 598.2 488 64.5
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 5.8e-169 598.2 497 62.6
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 9.8e-169 597.4 450 70.0
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 3.7e-168 595.5 494 63.8
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 4.9e-168 595.1 518 61.6
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 4.9e-168 595.1 447 68.2
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 4.9e-168 595.1 456 66.4
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 6.4e-168 594.7 506 62.6
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 6.4e-168 594.7 471 64.3
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 6.4e-168 594.7 447 66.7
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.1e-167 594.0 454 67.6
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.1e-167 594.0 454 67.6
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 1.1e-167 594.0 445 68.1
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 1.4e-167 593.6 467 64.0
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 1.9e-167 593.2 457 66.5
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 1.9e-167 593.2 511 61.8
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 4.1e-167 592.0 467 65.1
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 4.1e-167 592.0 467 65.1
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 4.1e-167 592.0 507 61.7
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 5.4e-167 591.7 450 66.2
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 9.2e-167 590.9 508 61.4
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 1.2e-166 590.5 502 62.2
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.2e-166 590.5 450 66.2
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 1.2e-166 590.5 508 61.4
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 1.6e-166 590.1 480 64.8
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 2.1e-166 589.7 497 62.4
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 2.7e-166 589.3 502 62.0
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 2.7e-166 589.3 509 61.9
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 4.6e-166 588.6 464 65.3
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.0e-166 588.2 508 61.6
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 7.8e-166 587.8 500 62.0
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 3.0e-165 585.9 502 61.4
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 3.0e-165 585.9 502 61.8
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 1.1e-164 583.9 501 61.3
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 5.6e-164 581.6 464 65.1
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 7.3e-164 581.3 509 59.9
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 3.6e-163 578.9 464 64.9
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 5.2e-162 575.1 508 60.6
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 1.5e-161 573.5 464 64.2
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 4.4e-161 572.0 503 59.6
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 9.9e-161 570.9 484 62.8
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.3e-160 570.5 501 59.9
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 4.9e-160 568.5 463 63.3
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 1.1e-159 567.4 456 62.1
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 2.4e-159 566.2 514 59.5
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 3.2e-159 565.8 502 59.8
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 3.6e-155 552.4 482 60.2
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 8.9e-154 547.7 452 61.7
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 7.6e-153 544.7 458 59.8
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 2.4e-143 513.1 514 53.7
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 2.4e-143 513.1 310 81.3
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 4.2e-143 512.3 390 65.9
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 1.7e-141 506.9 459 59.7
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 8.7e-141 504.6 470 58.3
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 1.2e-137 494.2 465 56.1
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 1.8e-133 480.3 528 48.9
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 4.9e-128 462.2 482 50.8
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 1.9e-124 450.3 505 53.1
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 1.0e-120 438.0 467 53.3
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.3e-117 427.6 498 49.2
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 2.5e-111 406.8 444 51.8
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 3.1e-106 389.8 317 65.0
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 7.2e-95 352.1 246 70.3
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 8.8e-77 292.0 277 58.1
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 3.7e-75 286.6 418 39.5
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 1.8e-74 284.3 430 41.2
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 1.7e-67 261.2 174 75.3
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 4.6e-65 253.1 375 44.5
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 2.1e-62 244.2 252 54.8
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 8.0e-62 242.3 225 56.4
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 7.8e-57 225.7 356 43.3
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.1e-55 221.9 380 34.7
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 1.6e-49 201.4 297 39.4
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 4.3e-39 166.8 175 53.7
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 1.8e-37 161.4 131 64.9
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 4.9e-35 153.3 407 30.7
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.3e-30 138.7 169 49.7
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 4.2e-26 123.6 96 61.5
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 5.6e-23 113.2 67 79.1
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 9.0e-21 105.9 78 62.8
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 1.1e-18 99.0 57 84.2
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 3.2e-18 97.4 72 62.5
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 1.6e-14 85.1 86 55.8
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 2.8e-14 84.3 127 44.9
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 1.2e-12 79.0 53 67.9
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 1.2e-12 79.0 53 67.9
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.2e-12 79.0 83 50.6
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 4.2e-10 70.5 64 53.1
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 1.1e-07 62.4 67 53.7


User provided reference genes

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