Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.3e-73 279.6 138 100.0
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 3.7e-73 278.1 138 99.3
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 3.7e-73 278.1 138 99.3
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.8e-72 275.8 136 100.0
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 3.1e-40 168.7 96 84.4
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.4e-32 142.5 132 53.8
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 3.5e-31 138.7 132 53.8
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 3.8e-30 135.2 132 53.8
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 3.8e-30 135.2 132 54.5
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 8.6e-30 134.0 132 49.2
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 1.9e-29 132.9 128 55.5
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.9e-29 132.9 139 52.5
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 3.3e-29 132.1 132 51.5
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 4.2e-29 131.7 135 47.4
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 7.2e-29 131.0 132 50.8
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.2e-28 130.2 137 50.4
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.6e-28 129.8 132 51.5
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.6e-28 129.8 137 48.9
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 2.1e-28 129.4 132 51.5
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.1e-28 129.4 132 49.2
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 3.6e-28 128.6 132 51.5
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 6.1e-28 127.9 135 45.9
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.0e-27 127.1 132 48.5
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.0e-27 127.1 132 50.0
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.4e-27 126.7 132 48.5
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 1.4e-27 126.7 132 47.7
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 3.0e-27 125.6 132 50.0
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 4.0e-27 125.2 129 50.4
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 4.0e-27 125.2 132 47.7
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 6.8e-27 124.4 129 48.1
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 6.8e-27 124.4 137 51.1
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.2e-26 123.6 129 49.6
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.6e-26 122.5 132 52.3
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.4e-26 122.1 128 50.8
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 3.4e-26 122.1 132 46.2
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 7.5e-26 120.9 129 51.9
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.3e-25 120.2 129 48.8
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.2e-25 119.4 133 48.1
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.9e-25 119.0 133 48.1
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.9e-25 119.0 137 47.4
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.7e-25 118.6 137 48.9
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 3.7e-25 118.6 132 47.0
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 3.7e-25 118.6 135 47.4
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 3.7e-25 118.6 137 47.4
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 4.9e-25 118.2 132 47.0
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 8.3e-25 117.5 131 48.9
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 8.3e-25 117.5 139 44.6
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.4e-24 116.7 137 46.0
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.8e-24 116.3 132 47.0
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 4.1e-24 115.2 136 48.5
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 7.0e-24 114.4 131 46.6
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 9.2e-24 114.0 135 47.4
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 9.2e-24 114.0 132 47.0
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 9.2e-24 114.0 132 44.7
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 9.2e-24 114.0 137 46.0
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 9.2e-24 114.0 137 44.5
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 4.6e-23 111.7 145 46.2
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 4.6e-23 111.7 130 45.4
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 4.6e-23 111.7 135 40.7
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 5.9e-23 111.3 131 45.0
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 7.8e-23 110.9 135 45.9
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.0e-22 110.5 128 50.0
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.0e-22 110.5 135 43.0
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.3e-22 110.2 89 59.6
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 2.3e-22 109.4 128 48.4
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 2.3e-22 109.4 135 41.5
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 2.9e-22 109.0 137 42.3
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.9e-22 109.0 132 43.2
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.9e-22 108.6 128 44.5
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 3.9e-22 108.6 132 46.2
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 5.0e-22 108.2 133 39.8
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 5.0e-22 108.2 132 43.2
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 6.6e-22 107.8 132 44.7
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 6.6e-22 107.8 135 45.2
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 6.6e-22 107.8 137 47.4
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 8.6e-22 107.5 131 44.3
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.1e-21 107.1 132 45.5
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.5e-21 106.7 135 44.4
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.5e-21 106.7 127 45.7
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.9e-21 106.3 135 45.2
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.5e-21 105.9 135 45.9
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.5e-21 105.9 129 41.1
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 3.3e-21 105.5 128 44.5
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 3.3e-21 105.5 132 42.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 3.3e-21 105.5 132 45.5
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.3e-21 105.5 137 41.6
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 4.3e-21 105.1 135 44.4
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 4.3e-21 105.1 124 45.2
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 7.3e-21 104.4 132 43.9
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 9.5e-21 104.0 132 45.5
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 9.5e-21 104.0 132 45.5
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.2e-20 103.6 132 43.9
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.6e-20 103.2 92 55.4
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 2.8e-20 102.4 132 43.9
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 4.7e-20 101.7 94 55.3
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 4.7e-20 101.7 132 50.0
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.0e-19 100.5 89 53.9
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.0e-19 100.5 130 40.0
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.8e-19 99.8 131 42.7
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.8e-19 99.8 132 41.7
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.3e-19 99.4 133 42.9
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 6.8e-19 97.8 137 40.9
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 8.9e-19 97.4 133 44.4
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 8.9e-19 97.4 132 43.9
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.2e-18 97.1 140 40.0
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 2.0e-18 96.3 137 43.1
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 2.6e-18 95.9 136 43.4
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 2.6e-18 95.9 135 43.7
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.4e-18 95.5 82 56.1
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 3.4e-18 95.5 133 42.9
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 3.4e-18 95.5 133 42.9
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 3.4e-18 95.5 148 41.2
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 5.8e-18 94.7 134 42.5
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 7.5e-18 94.4 135 42.2
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 7.5e-18 94.4 135 42.2
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 9.8e-18 94.0 138 42.0
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-17 93.2 136 41.9
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.7e-17 93.2 136 41.9
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.7e-17 93.2 142 37.3
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 2.2e-17 92.8 142 37.3
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.7e-17 92.0 142 37.3
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 3.7e-17 92.0 142 37.3
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 8.3e-17 90.9 91 49.5
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.1e-16 90.5 97 45.4
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.1e-16 90.5 92 46.7
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.4e-16 90.1 105 44.8
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 2.4e-16 89.4 131 38.2
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 5.4e-16 88.2 72 59.7
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 9.2e-16 87.4 86 47.7
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 1.2e-15 87.0 145 35.2
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.3e-14 83.6 148 35.8
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 3.0e-14 82.4 133 38.3
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 3.0e-14 82.4 133 38.3
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 3.0e-14 82.4 133 38.3
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.0e-14 82.4 128 40.6
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.5e-13 80.1 90 44.4
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 7.3e-13 77.8 105 41.9
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.6e-12 76.6 138 37.7
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.6e-12 75.5 60 60.0
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 4.7e-12 75.1 90 43.3
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 4.7e-12 75.1 91 39.6
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-11 73.9 129 37.2
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 1.8e-11 73.2 90 40.0
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.3e-11 72.8 134 37.3
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 4.0e-11 72.0 69 46.4
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 1.5e-10 70.1 95 36.8
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 9.8e-10 67.4 52 57.7
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 5.4e-08 61.6 88 37.5
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.2e-07 60.5 139 32.4
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 4.6e-07 58.5 46 63.0
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.9e-06 55.5 85 34.1


User provided reference genes

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