Gene: AT3G28956

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G28956
  • Transcript Identifier AT3G28956.4
  • Gene Type Coding gene
  • Location Chr3 : 10980916-10981469 : negative

Gene Family Information

  • ID HOM05D004569
  • #Genes/#Species 158/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G28956.4
  • uniprot F4J1Q7

Descriptions

  • Description RNA polymerase II, Rpb4, core protein
  • Computational description RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, nucleotide binding, catalytic activity; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT5G62950.3); Has 159 Blast hits to 159 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 17; Plants - 37; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006384
IBA
IEA
Gene Ontologytranscription initiation from RNA polymerase III promoter1
GO:0006384
IEA
InterProtranscription initiation from RNA polymerase III promoter
GO:0044237
IEA
GOA Databasecellular metabolic process
GO:0044237
IEA
InterProcellular metabolic process
GO:0006352
IEA
GOA DatabaseDNA-templated transcription, initiation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
Gene Ontologynucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0003899
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005666
IBA
IEA
Gene OntologyRNA polymerase III complex1
GO:0005666
IEA
InterProRNA polymerase III complex
GO:0030880
IEA
GOA DatabaseRNA polymerase complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038846 DNA-directed RNA polymerase III subunit RPC9
IPR038324 Rpb4/RPC9 superfamily
IPR010997 HRDC-like superfamily
Mapman id Description
35.1 not assigned.annotated