Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 5.6e-165 584.3 323 100.0
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 5.3e-115 418.3 326 77.6
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.3e-102 376.3 270 78.9
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.2e-101 374.0 270 78.5
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 2.6e-101 372.9 334 69.2
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.7e-100 370.2 281 76.2
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 2.2e-100 369.8 296 74.0
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 2.2e-100 369.8 321 71.0
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 2.8e-100 369.4 272 76.1
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 6.3e-100 368.2 280 75.4
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 1.1e-99 367.5 323 65.6
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.4e-99 367.1 307 71.3
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 2.4e-99 366.3 265 77.0
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 3.1e-99 365.9 314 70.1
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 3.1e-99 365.9 267 77.5
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 5.3e-99 365.2 318 70.8
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 5.3e-99 365.2 318 70.8
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 7.0e-99 364.8 325 68.6
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 9.1e-99 364.4 271 74.5
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 9.1e-99 364.4 262 77.1
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.2e-98 364.0 270 77.0
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.6e-98 363.6 267 77.2
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 1.6e-98 363.6 278 73.7
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 1.6e-98 363.6 282 75.2
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.0e-98 363.2 267 77.2
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 2.7e-98 362.8 270 76.7
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 4.5e-98 362.1 329 68.1
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 5.9e-98 361.7 280 74.3
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 7.7e-98 361.3 277 74.4
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 1.0e-97 360.9 258 76.7
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 1.3e-97 360.5 281 73.7
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 2.2e-97 359.8 331 65.9
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 3.8e-97 359.0 278 74.5
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 3.8e-97 359.0 268 76.1
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 3.8e-97 359.0 268 75.7
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 6.5e-97 358.2 266 75.6
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 6.5e-97 358.2 277 72.9
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 6.5e-97 358.2 276 74.6
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 6.5e-97 358.2 282 73.0
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 8.5e-97 357.8 329 66.3
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 1.1e-96 357.5 330 67.3
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 1.1e-96 357.5 277 73.3
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.1e-96 357.5 277 73.3
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 1.1e-96 357.5 278 73.7
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.5e-96 357.1 259 78.4
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 1.5e-96 357.1 280 73.2
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 1.9e-96 356.7 321 68.2
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.9e-96 356.7 265 75.5
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 2.5e-96 356.3 329 66.0
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 2.5e-96 356.3 286 73.4
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 4.2e-96 355.5 266 74.8
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.2e-96 355.5 277 72.6
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 7.2e-96 354.8 266 75.2
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 7.2e-96 354.8 332 66.0
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 9.4e-96 354.4 277 72.9
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.2e-95 354.0 313 68.1
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.2e-95 354.0 277 72.2
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.2e-95 354.0 314 68.2
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.2e-95 354.0 328 66.5
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 1.6e-95 353.6 267 75.7
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 1.6e-95 353.6 275 74.9
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 2.1e-95 353.2 332 66.3
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.1e-95 353.2 329 65.3
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 2.1e-95 353.2 334 66.8
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 2.1e-95 353.2 337 65.3
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 2.7e-95 352.8 261 77.0
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.7e-95 352.8 317 68.1
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 2.7e-95 352.8 266 74.4
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 3.6e-95 352.4 263 74.9
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 3.6e-95 352.4 266 75.6
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 4.7e-95 352.1 267 76.0
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 4.7e-95 352.1 254 77.2
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 4.7e-95 352.1 308 69.2
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 6.1e-95 351.7 313 68.1
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 6.1e-95 351.7 317 67.8
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 6.1e-95 351.7 266 75.2
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 6.1e-95 351.7 321 67.0
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 8.0e-95 351.3 281 72.2
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 8.0e-95 351.3 317 67.2
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 1.0e-94 350.9 262 76.0
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 1.0e-94 350.9 263 76.8
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 1.4e-94 350.5 330 65.8
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 1.4e-94 350.5 310 66.8
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.4e-94 350.5 326 67.5
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.8e-94 350.1 318 66.7
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 1.8e-94 350.1 303 69.0
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.8e-94 350.1 281 73.0
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 2.3e-94 349.7 281 73.0
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 3.0e-94 349.4 317 66.2
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 3.0e-94 349.4 315 67.9
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 3.0e-94 349.4 293 70.6
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.0e-94 349.0 298 68.8
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 4.0e-94 349.0 321 67.0
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 5.2e-94 348.6 337 65.0
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 5.2e-94 348.6 327 65.7
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 5.2e-94 348.6 327 65.7
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 5.2e-94 348.6 312 67.9
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 8.8e-94 347.8 266 74.1
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 8.8e-94 347.8 303 68.3
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 8.8e-94 347.8 303 68.3
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.2e-93 347.4 318 67.3
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.0e-93 346.7 332 66.9
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 2.0e-93 346.7 270 71.5
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 2.6e-93 346.3 278 71.2
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.4e-93 345.9 323 65.3
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 4.4e-93 345.5 310 67.4
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.4e-93 345.5 254 69.3
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 5.7e-93 345.1 281 71.9
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 5.7e-93 345.1 271 71.2
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 5.7e-93 345.1 268 72.4
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 5.7e-93 345.1 273 72.9
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 9.8e-93 344.4 308 66.9
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 9.8e-93 344.4 308 67.9
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.7e-92 343.6 314 66.9
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.7e-92 343.6 275 71.3
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 2.2e-92 343.2 304 66.4
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.2e-92 343.2 317 65.6
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 3.7e-92 342.4 309 67.0
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 4.8e-92 342.0 319 65.5
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 4.8e-92 342.0 306 66.3
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 4.8e-92 342.0 306 66.3
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 4.8e-92 342.0 297 68.7
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 4.8e-92 342.0 315 65.7
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 6.3e-92 341.7 315 65.4
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 6.3e-92 341.7 319 65.5
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 6.3e-92 341.7 320 67.8
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.4e-91 339.7 281 69.8
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 2.4e-91 339.7 241 78.4
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 7.0e-91 338.2 317 64.0
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 7.0e-91 338.2 317 64.0
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 7.0e-91 338.2 317 64.4
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 2.0e-90 336.7 323 64.1
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 7.7e-90 334.7 273 70.3
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.2e-88 328.9 308 67.5
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.2e-87 327.4 231 79.7
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 3.6e-87 325.9 310 63.9
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.0e-87 324.7 257 67.3
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 8.9e-86 321.2 229 80.3
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 2.0e-85 320.1 285 68.8
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 3.4e-85 319.3 241 76.8
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.7e-84 317.0 257 72.8
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 3.7e-84 315.8 255 74.1
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 9.2e-83 311.2 231 76.2
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 1.8e-78 297.0 264 62.5
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.2e-77 294.3 292 60.3
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 3.7e-76 289.3 177 85.3
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 8.3e-76 288.1 322 59.0
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.3e-76 288.1 266 58.3
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.5e-74 282.7 331 58.6
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.5e-74 282.7 331 58.6
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.0e-73 281.2 322 55.6
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.7e-73 280.4 312 60.6
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 3.9e-73 279.3 250 56.4
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.5e-72 277.3 252 56.7
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 1.4e-67 260.8 363 52.1
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 5.4e-67 258.8 196 76.0
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.5e-64 250.8 197 76.1
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.1e-62 244.6 206 63.1
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 3.7e-60 236.1 243 63.4
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 4.3e-56 222.6 180 77.2
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.8e-54 217.2 178 76.4
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 7.6e-53 211.8 262 44.3
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 6.4e-52 208.8 295 46.1
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 3.9e-49 199.5 149 69.8
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.4e-45 186.0 124 73.4
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 9.9e-45 184.9 125 72.0
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 1.7e-41 174.1 90 97.8
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.4e-37 159.8 167 65.9
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 3.2e-35 153.3 197 60.9
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 3.2e-35 153.3 101 77.2
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.1e-33 146.0 92 80.4
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 5.1e-33 146.0 140 61.4
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 6.2e-31 139.0 262 37.8
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.1e-30 138.3 98 70.4
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.8e-30 137.5 108 71.3
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.0e-17 95.1 83 77.1
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 3.9e-17 93.2 107 65.4
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 2.5e-16 90.5 122 46.7
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 3.7e-15 86.7 150 52.0
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 7.7e-13 79.0 84 75.0
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.7e-07 61.2 93 39.8
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 3.1e-06 57.0 117 31.6


User provided reference genes

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