Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 0.0e+00 1536.2 794 100.0
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 5.0e-239 831.6 770 57.1
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 5.5e-238 828.2 772 57.5
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 6.7e-236 821.2 762 58.5
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 1.8e-233 813.1 775 56.3
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 2.4e-233 812.8 769 57.3
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 1.5e-232 810.1 766 55.6
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 1.3e-231 807.0 772 57.0
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.7e-231 806.6 781 57.1
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 3.8e-231 805.4 772 56.1
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 1.1e-230 803.9 763 56.4
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 1.9e-230 803.1 772 56.9
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 2.5e-230 802.7 781 56.9
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 2.5e-230 802.7 769 56.8
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 4.2e-230 802.0 772 56.0
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 1.2e-229 800.4 773 55.5
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 2.1e-229 799.7 782 55.4
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 2.7e-229 799.3 773 56.0
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 7.9e-229 797.7 781 56.5
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 2.3e-228 796.2 749 58.3
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 3.0e-228 795.8 783 55.8
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 3.9e-228 795.4 763 55.7
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 5.1e-228 795.0 759 58.0
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 1.1e-227 793.9 763 54.7
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.1e-227 793.9 778 55.5
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.3e-227 792.3 786 55.7
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 4.4e-227 792.0 774 56.2
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 9.7e-227 790.8 825 52.7
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.7e-226 788.9 782 55.2
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 1.1e-225 787.3 745 56.2
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.4e-225 786.9 760 57.6
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 1.4e-225 786.9 773 56.7
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 1.8e-225 786.6 766 56.9
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 3.1e-225 785.8 769 54.2
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 5.3e-225 785.0 767 54.4
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.2e-224 783.9 778 55.1
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.2e-224 783.9 759 56.5
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 2.6e-224 782.7 775 55.4
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 2.6e-224 782.7 767 54.1
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 3.4e-224 782.3 748 56.3
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 7.7e-224 781.2 782 55.2
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 1.3e-223 780.4 802 54.6
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 1.3e-223 780.4 785 53.5
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 2.2e-223 779.6 772 55.8
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 5.0e-223 778.5 774 53.6
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 5.0e-223 778.5 774 53.6
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 5.0e-223 778.5 771 55.6
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 6.5e-223 778.1 750 56.1
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 1.4e-222 776.9 755 55.2
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 2.1e-221 773.1 772 53.9
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 3.6e-221 772.3 764 55.0
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 1.4e-220 770.4 765 55.6
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 2.3e-220 769.6 761 55.3
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 5.7e-219 765.0 761 54.8
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 1.3e-218 763.8 776 54.0
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 2.2e-218 763.1 780 52.8
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.8e-218 762.7 752 55.2
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 3.7e-218 762.3 749 55.4
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 1.1e-217 760.8 762 54.1
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 1.4e-217 760.4 771 52.7
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 1.2e-216 757.3 748 56.0
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 7.7e-216 754.6 748 55.2
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 2.2e-215 753.1 750 55.3
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 2.9e-215 752.7 763 53.9
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 6.5e-215 751.5 764 53.5
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 1.9e-214 750.0 760 55.5
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 4.2e-214 748.8 754 55.6
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 4.2e-214 748.8 729 55.3
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.6e-213 746.9 760 54.2
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 1.6e-213 746.9 757 53.4
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 2.7e-213 746.1 747 55.6
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 6.1e-213 745.0 759 53.5
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 6.7e-212 741.5 756 53.6
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 1.2e-211 740.7 751 55.4
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.6e-211 739.6 764 53.4
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 4.4e-211 738.8 749 54.9
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 5.3e-209 731.9 749 54.6
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.0e-209 731.5 748 54.5
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 9.1e-209 731.1 791 53.0
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 2.0e-208 729.9 760 53.0
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 4.2e-206 722.2 734 54.6
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 6.3e-202 708.4 768 51.0
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 3.1e-201 706.1 727 53.4
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 2.7e-200 703.0 772 50.1
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 6.5e-199 698.4 997 43.1
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.1e-198 697.6 743 52.9
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.5e-198 696.4 743 52.8
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 7.5e-195 684.9 858 45.6
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 4.9e-194 682.2 753 51.3
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 5.9e-192 675.2 956 43.2
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 2.8e-189 666.4 780 48.7
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 2.8e-189 666.4 663 54.3
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 7.8e-184 648.3 680 53.5
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 4.3e-182 642.5 423 76.4
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 5.8e-179 632.1 781 48.9
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 5.0e-175 619.0 631 52.9
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 3.7e-170 602.8 738 45.3
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 2.6e-163 580.1 758 43.5
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 7.8e-160 568.5 776 42.5
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 7.6e-155 552.0 621 50.7
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.3e-149 534.6 633 50.2
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.2e-147 528.1 486 57.2
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 3.5e-144 516.5 594 50.2
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 1.1e-134 485.0 766 40.7
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 5.1e-119 433.0 403 54.6
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 2.7e-104 384.0 478 46.2
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.7e-104 383.3 649 38.7
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.9e-90 337.4 472 42.6
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.8e-87 328.2 479 41.1
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 1.0e-82 312.4 1025 26.7
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 1.2e-75 288.9 747 31.9
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 7.3e-73 279.6 320 48.8
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.3e-71 274.6 335 48.7
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.0e-70 271.6 304 52.6
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.4e-69 266.5 266 55.3
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 6.0e-59 233.4 185 60.5
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 1.2e-54 219.2 282 47.2
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 2.0e-54 218.4 150 66.0
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 1.1e-52 212.6 156 66.0
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 3.2e-52 211.1 232 51.3
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 5.4e-52 210.3 746 26.5
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.3e-50 205.7 157 63.1
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 2.9e-45 188.0 389 33.9
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 1.3e-42 179.1 124 67.7
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.7e-42 178.7 291 37.8
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 6.7e-26 123.6 95 62.1
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 2.6e-22 111.7 258 32.6
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 6.4e-21 107.1 216 31.0
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.1e-20 106.3 118 50.8
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 7.1e-20 103.6 287 33.4
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.6e-19 100.9 101 50.5
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 1.9e-17 95.5 95 54.7
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 9.0e-15 86.7 64 67.2
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 4.9e-13 80.9 109 35.8
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 3.9e-10 71.2 189 30.2
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 5.1e-10 70.9 170 30.0
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 4.3e-09 67.8 171 26.3
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 7.4e-09 67.0 161 30.4
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 4.8e-08 64.3 61 50.8


User provided reference genes

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