Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 0.0e+00 1680.6 896 100.0
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 0.0e+00 1505.3 897 90.6
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 0.0e+00 1362.4 903 83.7
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 0.0e+00 1359.7 916 81.7
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 0.0e+00 1326.2 918 80.4
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 0.0e+00 1271.5 921 76.9
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 0.0e+00 1244.6 918 74.5
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 0.0e+00 1205.3 921 74.0
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 0.0e+00 1199.5 914 72.9
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 0.0e+00 1142.1 846 74.3
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 0.0e+00 1123.2 950 68.9
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 0.0e+00 1110.5 972 67.4
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 0.0e+00 1090.1 770 76.8
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 6.1e-312 1073.9 932 67.5
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 6.5e-280 967.6 956 58.8
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 6.1e-278 961.1 959 57.8
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 3.0e-277 958.7 942 59.3
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 2.0e-276 956.1 914 60.6
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 3.4e-276 955.3 950 58.8
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 4.4e-276 954.9 956 58.4
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 7.7e-273 944.1 900 60.4
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 6.1e-270 934.5 933 58.9
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 1.0e-269 933.7 945 58.4
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 1.7e-267 926.4 908 60.2
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 1.1e-266 923.7 946 58.2
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.5e-265 918.7 945 57.7
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 2.5e-263 912.5 859 59.7
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 3.6e-262 908.7 912 57.2
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 2.3e-261 906.0 872 60.6
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 2.0e-260 902.9 944 57.1
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 5.7e-260 901.4 847 61.4
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 7.5e-260 901.0 888 58.7
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.9e-259 899.0 944 56.9
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 4.9e-259 898.3 889 58.4
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 6.4e-259 897.9 895 57.2
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 1.7e-256 889.8 929 55.1
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.9e-255 886.3 858 59.7
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 7.3e-255 884.4 861 59.6
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.2e-254 883.6 930 54.8
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 8.0e-254 880.9 892 58.7
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 9.8e-252 874.0 918 55.6
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 2.2e-251 872.8 945 57.2
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 1.1e-250 870.5 877 57.5
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 7.0e-250 867.8 948 56.9
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.0e-249 866.3 858 58.5
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 1.0e-248 864.0 877 56.3
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 1.0e-248 864.0 831 59.7
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 1.7e-248 863.2 946 55.9
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 3.0e-248 862.4 859 57.7
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 6.6e-248 861.3 921 55.3
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 3.3e-247 859.0 947 56.0
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 3.1e-245 852.4 872 56.4
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 1.7e-243 846.7 881 58.8
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 2.2e-243 846.3 835 57.8
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 1.6e-241 840.1 964 52.6
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 6.0e-241 838.2 930 53.4
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 7.8e-241 837.8 959 52.8
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 2.3e-240 836.3 873 55.4
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 3.9e-240 835.5 903 55.6
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 5.1e-240 835.1 852 57.2
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.5e-239 833.6 887 55.1
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 2.8e-238 829.3 880 55.2
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 7.6e-236 821.2 952 54.1
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.1e-234 817.4 993 50.1
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 6.0e-233 811.6 914 52.6
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 8.6e-232 807.7 931 53.0
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 1.1e-231 807.4 897 52.7
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 5.6e-231 805.1 894 54.3
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 2.1e-230 803.1 959 51.6
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.1e-230 803.1 973 50.6
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.2e-227 793.1 796 58.2
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 3.2e-226 789.3 896 52.6
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 4.2e-226 788.9 943 50.5
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 5.4e-226 788.5 891 53.5
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 3.5e-225 785.8 803 55.7
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 3.1e-221 772.7 867 52.5
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 4.0e-221 772.3 852 54.2
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.2e-220 770.8 856 52.8
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 3.8e-219 765.8 882 54.5
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 3.0e-216 756.1 921 49.8
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 5.6e-215 751.9 946 49.2
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 8.4e-211 738.0 981 47.4
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 3.9e-208 729.2 897 50.2
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 5.1e-208 728.8 941 48.8
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 4.8e-206 722.2 945 48.4
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 7.6e-204 714.9 945 46.5
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 8.4e-203 711.4 932 47.4
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 8.4e-203 711.4 920 49.0
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 8.4e-203 711.4 932 47.4
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 3.2e-202 709.5 929 47.5
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 3.2e-202 709.5 929 47.9
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 2.1e-201 706.8 919 48.1
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 3.3e-199 699.5 936 47.9
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 1.4e-197 694.1 878 49.9
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 9.0e-197 691.4 936 48.0
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 7.6e-196 688.3 934 47.4
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 6.7e-192 675.2 936 46.2
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 1.6e-190 670.6 941 46.5
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 2.7e-185 653.3 924 45.9
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 2.2e-182 643.7 924 45.5
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 5.9e-180 635.6 718 53.8
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 8.5e-179 631.7 944 44.0
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 3.2e-178 629.8 594 56.6
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 1.1e-175 621.3 978 43.0
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 5.7e-175 619.0 917 43.6
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 3.7e-174 616.3 975 42.5
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.5e-170 604.4 842 45.4
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.5e-167 594.3 917 43.2
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 5.9e-164 582.4 937 42.4
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 2.3e-155 553.9 484 60.7
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 2.6e-151 540.4 877 41.2
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 7.3e-146 522.3 826 41.5
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.0e-144 516.9 480 57.3
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 1.3e-139 501.5 478 55.4
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 1.9e-125 454.5 288 81.9
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 4.0e-112 410.2 541 45.7
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 1.6e-108 398.3 876 34.7
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 6.9e-96 356.3 365 58.1
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.8e-88 331.6 484 42.4
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 4.0e-88 330.5 463 49.5
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 1.7e-86 325.1 374 53.7
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 4.3e-82 310.5 323 51.7
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.1e-76 291.6 416 47.8
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 1.9e-74 285.0 389 44.0
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 1.7e-73 282.0 406 43.1
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 3.2e-69 267.7 423 47.5
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 5.1e-67 260.4 262 52.3
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 5.7e-66 256.9 344 45.1
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 2.9e-62 244.6 412 45.9
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 4.2e-61 240.7 591 30.3
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 8.0e-60 236.5 511 32.5
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 9.1e-56 223.0 171 66.1
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 4.2e-45 187.6 170 56.5
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 6.8e-35 153.7 152 61.8
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 9.8e-34 149.8 152 60.5
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 4.4e-26 124.4 97 59.8
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 8.6e-22 110.2 201 39.3
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 2.1e-20 105.5 80 62.5
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.9e-16 92.4 88 48.9
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.4e-16 92.0 88 62.5
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.1e-15 89.0 90 50.0
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.1e-15 89.0 118 48.3
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 1.9e-13 82.4 64 65.6
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.4e-11 76.3 77 51.9
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 4.0e-11 74.7 139 41.0
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 7.5e-10 70.5 161 39.8
Zm00001eb127560 Zea mays HOM05D004199 ORTHO05D005905 1.7e-09 69.3 235 31.9
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.7e-07 62.0 38 65.8
TPR.G37907 Trifolium pratense HOM05D004199 ORTHO05D411047 6.0e-07 60.8 57 54.4


User provided reference genes

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