Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1890.2 984 100.0
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1728.0 988 90.9
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1619.8 1044 81.5
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1602.4 988 84.5
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1595.1 985 84.5
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1562.0 988 82.3
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1536.9 987 82.1
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1536.9 987 82.1
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1382.1 988 75.4
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1358.6 996 73.9
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1355.1 998 72.6
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1353.6 1042 71.5
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1349.3 1034 71.3
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1347.8 1031 70.8
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1340.1 1002 72.7
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1335.1 999 72.5
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1334.3 1050 70.3
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1333.9 1050 70.1
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1333.2 1032 71.0
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1332.4 1004 72.9
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1330.9 996 72.4
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1330.9 1074 69.3
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1327.4 996 71.4
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1323.1 993 71.6
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1321.2 999 72.2
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1320.8 995 71.9
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1315.1 1000 71.6
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1312.4 989 72.2
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1311.6 994 70.2
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1311.2 992 71.6
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1308.5 1049 69.5
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1305.4 997 71.2
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1302.3 994 71.7
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1289.6 987 69.6
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1288.9 1044 68.8
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1284.6 995 70.6
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1282.7 1008 70.0
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1282.3 990 70.5
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1280.0 995 69.5
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1278.5 985 70.4
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1278.1 990 70.1
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1275.4 990 70.6
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1274.2 988 68.8
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1273.5 984 70.2
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1272.3 994 69.7
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1271.9 992 70.1
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1270.8 987 68.8
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1270.4 1019 69.2
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1270.0 987 68.8
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1270.0 987 68.8
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1268.8 988 68.6
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1268.8 991 69.6
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1265.4 987 69.1
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1263.8 990 68.7
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1263.4 990 68.1
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1262.7 992 69.1
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1261.1 987 67.9
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1260.0 996 69.3
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1258.8 987 68.1
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1254.2 988 68.7
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1254.2 987 68.0
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1253.4 987 68.0
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1253.0 988 68.0
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1252.7 991 69.2
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1248.4 1046 67.1
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1241.9 1174 61.0
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1239.2 988 69.1
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1236.9 1036 65.7
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1233.8 994 68.6
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1233.0 988 67.4
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1230.3 989 67.2
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1226.8 989 67.1
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1224.5 1013 66.4
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1220.7 989 68.6
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1216.4 1021 66.4
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1211.8 994 67.1
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 0.0e+00 1211.8 988 66.8
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1203.7 1001 66.0
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1138.3 832 73.1
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1137.5 985 64.1
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1132.5 982 63.0
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1130.5 919 67.6
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 0.0e+00 1125.9 1000 63.3
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1123.6 833 72.7
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1117.8 993 59.9
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1107.0 851 70.9
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1105.9 888 69.5
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1095.5 1005 59.6
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 0.0e+00 1095.5 1002 60.7
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 2.0e-306 1055.8 594 92.6
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 4.3e-293 1011.5 989 58.7
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 1.5e-290 1003.0 984 59.0
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 9.1e-275 950.7 1016 53.2
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 1.3e-268 930.2 1064 50.9
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 2.4e-267 926.0 1071 50.2
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 5.7e-261 904.8 1000 51.3
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 1.2e-258 897.1 761 66.0
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 9.4e-256 887.5 678 71.1
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 2.7e-218 763.1 724 60.2
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 4.9e-212 742.3 811 55.0
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 4.4e-205 719.2 612 65.4
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 8.7e-201 704.9 953 47.5
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.9e-200 703.7 552 70.8
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 6.7e-169 599.0 559 60.6
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 7.7e-157 558.9 989 34.8
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 1.0e-140 505.4 392 67.6
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 2.4e-134 484.2 358 67.6
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 4.5e-133 479.9 277 88.8
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 4.4e-128 463.4 283 84.1
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 5.9e-125 453.0 278 81.7
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 5.0e-124 449.9 996 32.5
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 2.8e-122 444.1 292 78.1
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.8e-122 444.1 305 71.1
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 4.1e-118 430.3 353 63.7
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.3e-108 398.7 364 60.2
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.6e-106 391.7 1277 28.1
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 4.0e-105 387.1 939 31.1
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.9e-99 368.2 222 82.9
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 1.3e-92 345.5 352 51.4
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.1e-84 317.0 292 57.9
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 8.1e-82 309.7 168 91.7
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 5.3e-81 307.0 181 83.4
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 7.4e-75 286.6 256 60.2
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.9e-73 280.0 205 68.3
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 3.8e-71 274.2 145 95.2
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.8e-58 231.5 144 76.4
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.1e-57 227.6 205 61.0
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 6.9e-57 226.9 150 78.7
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 1.4e-54 219.2 249 50.6
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 1.3e-50 206.1 105 99.0
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-50 206.1 129 76.0
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 1.4e-49 202.6 214 57.0
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.1e-49 201.1 129 74.4
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 2.0e-48 198.7 166 66.3
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 3.9e-44 184.5 98 92.9
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.7e-42 177.9 131 67.2
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 4.8e-42 177.6 203 54.2
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 2.0e-40 172.2 123 74.0
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-35 156.4 109 70.6
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.8e-28 132.5 85 71.8
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 2.3e-28 132.1 85 72.9
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 2.0e-27 129.0 139 55.4
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.1e-22 113.2 166 41.0
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 3.8e-15 88.2 42 97.6
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 4.9e-10 71.2 45 84.4
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 1.9e-06 59.3 59 50.8


User provided reference genes

Program Settings