Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 6.3e-194 680.6 354 100.0
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 8.3e-178 627.1 348 93.1
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.4e-177 626.3 349 94.0
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 7.0e-177 624.0 348 92.2
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.0e-164 583.6 345 88.4
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 3.7e-162 575.1 345 86.1
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.1e-161 573.5 349 85.4
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 4.1e-161 571.6 334 87.7
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.6e-160 569.7 349 85.1
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.3e-159 566.6 352 83.5
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.3e-159 566.6 339 85.3
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 8.6e-159 563.9 350 83.4
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 4.7e-157 558.1 323 87.9
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.8e-156 556.2 338 84.3
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.8e-156 556.2 357 81.5
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 2.3e-156 555.8 323 87.0
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.4e-155 552.0 346 81.5
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.2e-154 549.3 324 85.8
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 4.9e-154 548.1 332 84.9
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 4.9e-154 548.1 338 83.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 8.3e-154 547.4 322 86.0
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 8.3e-154 547.4 338 82.5
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.1e-153 547.0 338 82.5
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.9e-153 546.2 338 82.2
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 4.1e-153 545.0 338 82.0
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 4.1e-153 545.0 343 80.8
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.1e-153 545.0 340 81.8
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 5.4e-153 544.7 338 82.8
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.2e-152 543.5 343 80.8
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.0e-152 542.7 341 81.8
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.5e-152 542.0 346 80.1
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 6.0e-152 541.2 343 81.3
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 7.8e-152 540.8 352 80.1
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.7e-151 539.7 340 81.5
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.0e-151 538.9 343 80.8
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 3.9e-151 538.5 322 85.1
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 5.0e-151 538.1 329 84.2
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 5.0e-151 538.1 321 84.7
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.0e-151 538.1 325 84.0
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.9e-150 536.2 339 81.4
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.3e-150 535.0 325 83.4
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.6e-150 534.6 325 83.4
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 7.3e-150 534.3 322 84.5
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 7.3e-150 534.3 323 84.8
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 9.5e-150 533.9 324 83.3
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 9.5e-150 533.9 343 79.9
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.2e-149 533.5 322 83.9
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.8e-149 532.3 325 84.0
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 2.8e-149 532.3 349 77.9
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 3.6e-149 531.9 337 80.4
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 4.7e-149 531.6 322 82.9
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 6.2e-149 531.2 322 82.9
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.4e-148 530.0 339 79.6
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.4e-148 530.0 367 76.3
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.4e-148 530.0 322 82.6
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 1.8e-148 529.6 321 82.2
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 2.3e-148 529.3 349 79.4
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 2.3e-148 529.3 326 83.1
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 2.3e-148 529.3 323 83.9
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.1e-148 528.9 325 81.2
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.1e-148 528.9 346 78.9
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.1e-148 528.9 346 78.9
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 2.6e-147 525.8 335 79.7
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 2.6e-147 525.8 322 82.6
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.4e-147 525.4 344 79.9
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 4.4e-147 525.0 350 76.6
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 4.4e-147 525.0 350 76.6
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 4.4e-147 525.0 322 82.0
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 4.4e-147 525.0 331 81.0
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 5.8e-147 524.6 358 76.8
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 7.5e-147 524.2 336 80.1
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 7.5e-147 524.2 324 82.1
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.5e-147 524.2 344 79.7
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.7e-146 523.1 345 78.0
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 2.2e-146 522.7 350 76.6
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 2.2e-146 522.7 335 79.4
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 2.9e-146 522.3 344 78.5
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 3.7e-146 521.9 350 76.0
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 3.7e-146 521.9 328 79.9
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.7e-146 521.9 322 80.4
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.7e-146 521.9 333 79.6
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.7e-146 521.9 322 80.4
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 3.7e-146 521.9 340 80.9
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.9e-146 521.5 349 76.2
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 6.4e-146 521.2 350 76.0
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 8.3e-146 520.8 325 80.3
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.1e-145 520.4 320 80.6
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.1e-145 520.4 327 80.7
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.4e-145 520.0 322 82.9
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.9e-145 519.6 334 79.9
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.4e-145 519.2 325 80.3
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 2.4e-145 519.2 350 76.0
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 3.2e-145 518.8 322 80.7
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.1e-145 518.5 325 82.8
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 5.4e-145 518.1 350 75.7
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 9.2e-145 517.3 322 81.4
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.2e-144 516.9 323 81.4
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.6e-144 516.5 350 75.7
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.6e-144 516.5 325 80.0
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.6e-144 516.5 333 79.9
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 2.1e-144 516.2 322 81.7
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 2.1e-144 516.2 341 76.8
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 2.7e-144 515.8 350 75.4
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 2.7e-144 515.8 350 75.4
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 1.0e-143 513.8 341 76.5
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 1.0e-143 513.8 341 76.5
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.3e-143 513.5 328 79.0
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 1.3e-143 513.5 354 76.6
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 3.0e-143 512.3 322 80.1
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 3.9e-143 511.9 320 82.5
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.1e-142 510.4 321 81.6
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 2.5e-142 509.2 322 81.7
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 7.3e-142 507.7 338 76.9
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-141 506.5 322 79.2
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-141 506.5 322 79.2
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 6.2e-141 504.6 322 78.3
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 8.1e-141 504.2 387 69.5
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 8.1e-141 504.2 344 76.2
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-140 503.4 299 83.3
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.4e-140 503.4 414 67.4
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.8e-140 503.1 318 82.1
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.8e-140 503.1 330 78.5
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.4e-140 502.7 374 70.3
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.4e-140 502.7 362 72.9
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 5.2e-140 501.5 322 78.0
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.0e-139 499.6 379 69.4
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 2.6e-139 499.2 322 79.2
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.4e-137 491.5 339 75.8
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.1e-137 491.1 339 75.8
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.0e-135 487.3 283 86.6
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.0e-135 485.7 283 86.2
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.5e-134 483.4 322 76.4
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.1e-132 477.2 321 77.3
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.4e-132 476.9 350 71.1
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 9.0e-132 474.2 327 73.4
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 2.9e-130 469.2 306 79.1
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 4.9e-130 468.4 326 72.4
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.4e-129 466.8 325 74.2
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 5.4e-129 464.9 328 72.9
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.2e-128 463.8 336 71.7
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.6e-128 461.8 312 75.6
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 4.6e-128 461.8 332 70.8
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 3.9e-127 458.8 324 72.2
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.1e-124 450.7 303 78.5
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 4.5e-123 445.3 298 74.8
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 9.9e-123 444.1 320 70.3
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.4e-121 440.3 298 74.5
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 3.3e-110 402.5 297 68.7
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.5e-105 386.3 313 63.9
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 3.2e-105 386.0 249 79.9
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 7.1e-105 384.8 233 85.4
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 4.6e-104 382.1 232 84.5
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 2.3e-95 353.2 288 62.5
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 5.0e-90 335.5 230 74.8
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 4.4e-86 322.4 291 64.6
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 3.8e-74 282.7 194 77.8
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 9.7e-70 268.1 161 85.1
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 3.1e-68 263.1 308 51.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.6e-62 243.4 335 46.3
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 9.5e-49 198.4 112 84.8
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 3.4e-46 189.9 112 86.6
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 6.6e-42 175.6 177 58.2
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 6.6e-42 175.6 177 58.2
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 6.6e-42 175.6 177 58.2
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 2.0e-30 137.5 99 68.7
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 3.4e-30 136.7 299 32.8
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 9.9e-30 135.2 97 70.1
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 9.9e-30 135.2 97 70.1
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 1.3e-29 134.8 98 68.4
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 6.4e-29 132.5 97 69.1
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 4.1e-28 129.8 101 65.3
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.0e-26 125.2 102 61.8
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.5e-25 121.3 101 61.4
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.3e-17 93.6 67 77.6
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 7.3e-17 92.4 61 82.0
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 9.6e-17 92.0 63 69.8
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.2e-16 91.7 49 91.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 2.4e-07 60.8 33 81.8
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 2.0e-06 57.8 35 74.3


User provided reference genes

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